update spladder

ylab-hi · Jun 23, 2024 · 51b29e7 · 51b29e7
1 parent 9e02ce5
commit 51b29e7
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Showing 4 changed files with 3 additions and 3 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -21,6 +21,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 ### Fix 
 
 - Separated samtools, bcftools and realign environments to avoid conflicts
+- Updated splAdder to v3.0.5
 
 ## [0.2.6] - 2024-06-20
 

diff --git a/workflow/envs/spladder.yml b/workflow/envs/spladder.yml
@@ -5,4 +5,4 @@ dependencies:
  - python=3.8
  - pip
  - pip:
-   - spladder==3.0.4
+   - spladder==3.0.5
diff --git a/workflow/rules/altsplicing.smk b/workflow/rules/altsplicing.smk
@@ -23,7 +23,7 @@ rule spladder:
             {params.confidence} \
             {params.iteration} \
             {params.edgelimit} \
-            {log} > 2>&1
+            {log} 
       """
 
 rule splicing_to_vcf:

diff --git a/workflow/scripts/run_spladder.sh b/workflow/scripts/run_spladder.sh
@@ -28,4 +28,3 @@ if [ ! -d $output ]; then
     echo "Spladder did not generate output. Creating empty folder."
     mkdir -p $output
 fi
-