qualign

Description

qualign is a demonstration software to solve sequence alignment problems using quadratic unconstrained binary optimization.

Requirement

• python (pyqubo, requests packages)
• D-wave or Fujitsu Digital annealer account

Install

git clone github.com:ymatsumoto/qualign
pip install pyqubo requests

Usage

python3 qualign.py -s1 "AA1SEQ" -s2 "AA2SEQ"

Licence

MIT Licence

Contact

Yuki Matsumoto (matsumoto@gen-info.osaka-u.ac.jp)

Citation

Not published yet.