New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Task1 feature beta diff #82

Open

jamesbaye wants to merge 3 commits into master from task1_feature_beta-diff

Collaborator

jamesbaye commented Nov 13, 2020

The average regional methylation difference between case and controls (i.e. beta_diff) computation is now encapsulated in its own function.
In the new function, the formula is corrected (average over CpGs first, then over controls).
epimutations now outputs a beta_diff column by default.

jamesbaye added 2 commits

November 13, 2020 17:23


          add beta diff method

2b3646f


          incorporated beta_diff estimation in epimutations

4efe1da

jamesbaye requested a review from carleshf

November 13, 2020 17:43


          filter based on beta_diff absolute value

dae2061

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment