Name		Name	Last commit message	Last commit date
Latest commit History 11 Commits
.ipynb_checkpoints		.ipynb_checkpoints
.vscode		.vscode
__pycache__		__pycache__
cafe5_script		cafe5_script
genomics		genomics
phylogeny		phylogeny
polyphasicTaxonomy		polyphasicTaxonomy
.gitattributes		.gitattributes
1		1
CNEr.R		CNEr.R
ColorPalette.html		ColorPalette.html
GC_content.py		GC_content.py
LICENSE		LICENSE
Makefile		Makefile
README.md		README.md
Run_by_line_test		Run_by_line_test
aa_spelling_handler.py		aa_spelling_handler.py
abspath.py		abspath.py
abspath.sh		abspath.sh
add_complex_information.py		add_complex_information.py
annotate_sequence_from_alignment.py		annotate_sequence_from_alignment.py
ascp.sh		ascp.sh
awk		awk
base_locate.py		base_locate.py
beast_label_change.py		beast_label_change.py
bg.png		bg.png
blastExonerate.py		blastExonerate.py
blast_for_exonerate.sh		blast_for_exonerate.sh
blastwise.py		blastwise.py
calculateGenomeSize.py		calculateGenomeSize.py
cds2aa.pl		cds2aa.pl
check_new_record.sh		check_new_record.sh
check_start_stop_codon.py		check_start_stop_codon.py
check_whether_species_has_nucleotide_sequence.py		check_whether_species_has_nucleotide_sequence.py
codondict.py		codondict.py
combine_alignment_by_sameid.py		combine_alignment_by_sameid.py
combine_alignment_with_same_sequence_identifier.py		combine_alignment_with_same_sequence_identifier.py
concatenate_alignment.py		concatenate_alignment.py
concatenate_singlecopy_from_multiple_species.py		concatenate_singlecopy_from_multiple_species.py
convert_iqtree_for_mega_input.sh		convert_iqtree_for_mega_input.sh
convert_mrbayes_sampletrees_style_for_logcombiner.sh		convert_mrbayes_sampletrees_style_for_logcombiner.sh
download_marker_sequences_by_taxa_table.py		download_marker_sequences_by_taxa_table.py
enpand.py		enpand.py
extend_seq_for_start_stop_codon.py		extend_seq_for_start_stop_codon.py
extract_ITS_sequences.py		extract_ITS_sequences.py
extract_palette_from_figure.py.ipynb		extract_palette_from_figure.py.ipynb
extract_pdf_pages.py		extract_pdf_pages.py
fastaSegment.py		fastaSegment.py
fastalength.py		fastalength.py
fastqInfo.sh		fastqInfo.sh
filterProtein.py		filterProtein.py
filter_gb_by_LOCUS_id.py		filter_gb_by_LOCUS_id.py
filter_orthogroups_genecount_matrix.py		filter_orthogroups_genecount_matrix.py
filter_tmhmm.py		filter_tmhmm.py
find_bases_index_in_alignment.py		find_bases_index_in_alignment.py
fisher.sh		fisher.sh
ftk_barcode_from_genome_to_dataset.py		ftk_barcode_from_genome_to_dataset.py
ftk_blastn_barcode_subject_formater.py		ftk_blastn_barcode_subject_formater.py
ftk_extract_marker_from_genome.py		ftk_extract_marker_from_genome.py
ftk_gc_content.py		ftk_gc_content.py
ftk_get_netgpi.R		ftk_get_netgpi.R
gb2protein.py		gb2protein.py
genome_assemble_level.py		genome_assemble_level.py
genome_size.py		genome_size.py
getAssemblySummary.py		getAssemblySummary.py
gff3ToBankitTbl.py		gff3ToBankitTbl.py
guess_encoding.py		guess_encoding.py
join_BUSCO_genes_alignment.py.py		join_BUSCO_genes_alignment.py.py
manipulate_orthogroup_matrix.py		manipulate_orthogroup_matrix.py
manipulate_orthogroup_matrix_for_phylogeny.py		manipulate_orthogroup_matrix_for_phylogeny.py
mergePdf.py		mergePdf.py
msa2rawfasta.py		msa2rawfasta.py
msa_length.py		msa_length.py
orthofinder_build_singlecopy_gene_dir.py		orthofinder_build_singlecopy_gene_dir.py
orthofinder_single_copy_dataset.py		orthofinder_single_copy_dataset.py
parse_antismash_result.py		parse_antismash_result.py
phylogenomics_concatenate_alignment_by_evolution_models.py		phylogenomics_concatenate_alignment_by_evolution_models.py
picture2pdf.py		picture2pdf.py
pip_mirrors.sh		pip_mirrors.sh
plot_STACEY_result.R		plot_STACEY_result.R
pyfunction.py		pyfunction.py
qsub_template.sh		qsub_template.sh
replace_fastaid.py		replace_fastaid.py
resize_.jpeg		resize_.jpeg
resize_shazam.jpg		resize_shazam.jpg
rmOutToGFF3.py		rmOutToGFF3.py
rm_duplicate_assembly_sra.py		rm_duplicate_assembly_sra.py
rm_stat_TEs.py		rm_stat_TEs.py
rosalind.py		rosalind.py
run_tmhmm.py		run_tmhmm.py
seqid_mapper.py		seqid_mapper.py
shazam.jpg		shazam.jpg
sort_by_list.py		sort_by_list.py
spades_filter.sh		spades_filter.sh
spider_get_assemblies_metadata.py		spider_get_assemblies_metadata.py
splitFasta		splitFasta
split_marker_dataset.py		split_marker_dataset.py
split_multifasta2singlefasta_file.py		split_multifasta2singlefasta_file.py
stat_RM_repeats_content.py		stat_RM_repeats_content.py
stat_assembly.py		stat_assembly.py

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