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Undefined file on scatter #34
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As a workaround, did you try |
Okay, that doesn't work. Sticking with your original example and running with https://www.commonwl.org/v1.0/Workflow.html#WorkflowStepInput
(emphasis added)
Here we see the value of |
Even running |
@drjrm3 Here is a workaround, as
|
If you guys find the fix, don't forget to create a pull request and sign off per the instructions. Thanks! |
@drjrm3, I test the @mr-c method, it works. you can use it as a workaround, and to make @mr-c my understanding, for |
@skeeey - Thanks. This does resolved the current issue I am experiencing. However, I use this example in a larger workflow and now the next step is having problem. I will work on a minimal example and open a new ticket. For now, however, I think this can be considered a good workaround. @mr-c - Comparing your scatter with my original example, which is best practice? |
In an attempt to overcome #20 (using the same general example as in #33) I have moved the scatter down to the lowest level. However, I found that when building a filename with
valueFrom
inside the scatter that it returnsundefined
.However, this is not reproducible in cwltool where the filename gets correctly built. This seems like a cwlexec specific issue, but it could also be that I am not using best practices when building a string from within a scatter.
UndefinedFile.tar.gz
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