2021 Merged Seurat v2 and v3 support into the same code base. Bug fixes.
2019~2020 Added support for Seurat 3. Added more options in the config. Bug fixes.
08-15-2018
- Full application rewrite for speed and simplicity in viewing only 1 dataset at a time. Table added for differential expression navigation. Download features still need to be re-implemented.
07-17-2018
- Moved data loading to the global environment rather than per user session. Added more config options.
07-15-2018
- Visualize up to 3 datasets simultaneously and interactively in the same window.
- Both horizontal and vertical layouts are available.
07-14-2018
- Add Plotly interactive mode. Click on a gene in the dot plot to show it's distribution on t-SNE/UMAP.
- The interactive mode requires the new ggplot2
v3.0.0and the dev branch of plotly. - Non-interactive mode works for both ggplot2
v2.2.1andv3.0.0
07-13-2018
- Visualize two datasets simultaneously. Can easily switch beteen more datasets from the dropdown menu.
- Plot cluster distribution on UMAP/t-SNE plots.
- Plot the expression pattern of individual marker genes on UMAP/t-SNE embeddings.
- Plot cluster-averaged expression of marker gene lists using dot plots.
- Automatic resizing/scaling of figures to fit different browser windows and screen resolutions.
- Export publication-quality figures in PDF and PNG formats. (recommend using manual resizing for consistency)
- Specify pre-analyzed datasets in the JSON config file (see
example_config.json). - Currently support Seurat data format.