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When QTL-seq stops an error, please refer to the message on the terminal or in the log file.
In this case, 008qtlseq/qtlseq_out/log/samtools.log might have the information to solve the error.
Dear developer,
The Samtools error information as following stops the pipeline. I think it's not really an error.
[QTL-seq:2022-12-06 10:14:05] start to merge BAMs.
[QTL-seq:2022-12-06 10:52:35] !!ERROR!! samtools sort -m 1G -@ 40 -o 008qtlseq/qtlseq_out/20_bam/bulk1.bam 008qtlseq/qtlseq_out/20_bam/bulk1.unsorted.bam >> 008qtlseq/qtlseq_out/log/samtools.log 2>&1
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