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Error for samtools error info #38

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Chuhao-Li opened this issue Dec 6, 2022 · 1 comment
Closed

Error for samtools error info #38

Chuhao-Li opened this issue Dec 6, 2022 · 1 comment

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@Chuhao-Li
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Dear developer,

The Samtools error information as following stops the pipeline. I think it's not really an error.

[QTL-seq:2022-12-06 10:14:05] start to merge BAMs.
[QTL-seq:2022-12-06 10:52:35] !!ERROR!! samtools sort -m 1G -@ 40 -o 008qtlseq/qtlseq_out/20_bam/bulk1.bam 008qtlseq/qtlseq_out/20_bam/bulk1.unsorted.bam >> 008qtlseq/qtlseq_out/log/samtools.log 2>&1

@YuSugihara
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I'm sorry for the late response.

I leave some comments for future QTL-seq users.

When QTL-seq stops an error, please refer to the message on the terminal or in the log file.
In this case, 008qtlseq/qtlseq_out/log/samtools.log might have the information to solve the error.

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