qsub

qsub/.gitignore

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+*.sh

qsub/exemplar_make_pbs_scripts.m

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+function exemplar_make_pbs_scripts
+
+num = 11;
+
+is_multiple = 0;
+if is_multiple
+    num_job = 36;
+    index = round(linspace(1, num, num_job+1));
+else
+    num_job = num;
+end
+
+for o_i = 1:num_job
+
+  fid = fopen(sprintf('run%d.sh', o_i), 'w');
+
+  fprintf(fid, '#!/bin/bash\n');
+  fprintf(fid, '#PBS -S /bin/bash\n');
+  fprintf(fid, '#PBS -N run_it%d\n', o_i);
+  fprintf(fid, '#PBS -l nodes=1:ppn=12\n');
+  fprintf(fid, '#PBS -l mem=48gb\n');
+  fprintf(fid, '#PBS -l walltime=96:00:00\n');
+  fprintf(fid, '#PBS -q cvgl\n');
+  fprintf(fid, 'echo "I ran on:"\n');
+  fprintf(fid, 'cat $PBS_NODEFILE\n');
+
+  fprintf(fid, 'cd /scail/scratch/u/yuxiang/L2A\n');
+  if is_multiple
+      if o_i == num_job
+          s = sprintf('%d:%d', index(o_i), index(o_i+1));
+      else
+          s = sprintf('%d:%d', index(o_i), index(o_i+1)-1);
+      end
+  else
+      s = num2str(o_i);
+  end
+  fprintf(fid, ['matlab_r2013b -nodesktop -nosplash -r "grid_search(' s '); exit;"']);
+  fclose(fid);
+end
+
+fid = fopen('exemplar_qsub.sh', 'w');
+fprintf(fid, 'for (( i = 1; i <= %d; i++))\n', num_job);
+fprintf(fid, 'do\n');
+fprintf(fid, '  /usr/local/bin/qsub run$i.sh\n');
+fprintf(fid, '  sleep 5\n');
+fprintf(fid, 'done\n');
+fclose(fid);