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# Minimal makefile for Sphinx documentation | ||
# | ||
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# You can set these variables from the command line. | ||
SPHINXOPTS = | ||
SPHINXBUILD = sphinx-build | ||
SPHINXPROJ = pyod | ||
SOURCEDIR = . | ||
BUILDDIR = _build | ||
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# Put it first so that "make" without argument is like "make help". | ||
help: | ||
@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) | ||
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.PHONY: help Makefile | ||
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# Catch-all target: route all unknown targets to Sphinx using the new | ||
# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). | ||
%: Makefile | ||
@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) |
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# -*- coding: utf-8 -*- | ||
# | ||
# Configuration file for the Sphinx documentation builder. | ||
# | ||
# This file does only contain a selection of the most common options. For a | ||
# full list see the documentation: | ||
# http://www.sphinx-doc.org/en/master/config | ||
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# -- Path setup -------------------------------------------------------------- | ||
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# If extensions (or modules to document with autodoc) are in another directory, | ||
# add these directories to sys.path here. If the directory is relative to the | ||
# documentation root, use os.path.abspath to make it absolute, like shown here. | ||
# | ||
import os | ||
import sys | ||
sys.path.insert(0, os.path.abspath('C:/Users/yzhao066/Desktop/Pyod/')) | ||
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# -- Project information ----------------------------------------------------- | ||
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project = 'pyod' | ||
copyright = '2018, Yue Zhao' | ||
author = 'Yue Zhao' | ||
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# The short X.Y version | ||
version = '' | ||
# The full version, including alpha/beta/rc tags | ||
release = '0.2.4' | ||
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# -- General configuration --------------------------------------------------- | ||
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# If your documentation needs a minimal Sphinx version, state it here. | ||
# | ||
# needs_sphinx = '1.0' | ||
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# Add any Sphinx extension module names here, as strings. They can be | ||
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom | ||
# ones. | ||
extensions = [ | ||
'sphinx.ext.autodoc', | ||
'sphinx.ext.doctest', | ||
'sphinx.ext.intersphinx', | ||
'sphinx.ext.coverage', | ||
'sphinx.ext.imgmath', | ||
'sphinx.ext.viewcode', | ||
] | ||
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# Add any paths that contain templates here, relative to this directory. | ||
templates_path = ['_templates'] | ||
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# The suffix(es) of source filenames. | ||
# You can specify multiple suffix as a list of string: | ||
# | ||
# source_suffix = ['.rst', '.md'] | ||
source_suffix = '.rst' | ||
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# The master toctree document. | ||
master_doc = 'index' | ||
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# The language for content autogenerated by Sphinx. Refer to documentation | ||
# for a list of supported languages. | ||
# | ||
# This is also used if you do content translation via gettext catalogs. | ||
# Usually you set "language" from the command line for these cases. | ||
language = None | ||
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# List of patterns, relative to source directory, that match files and | ||
# directories to ignore when looking for source files. | ||
# This pattern also affects html_static_path and html_extra_path . | ||
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] | ||
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# The name of the Pygments (syntax highlighting) style to use. | ||
pygments_style = 'sphinx' | ||
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# -- Options for HTML output ------------------------------------------------- | ||
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# The theme to use for HTML and HTML Help pages. See the documentation for | ||
# a list of builtin themes. | ||
# | ||
html_theme = 'alabaster' | ||
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# Theme options are theme-specific and customize the look and feel of a theme | ||
# further. For a list of options available for each theme, see the | ||
# documentation. | ||
# | ||
# html_theme_options = {} | ||
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# Add any paths that contain custom static files (such as style sheets) here, | ||
# relative to this directory. They are copied after the builtin static files, | ||
# so a file named "default.css" will overwrite the builtin "default.css". | ||
html_static_path = ['_static'] | ||
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# Custom sidebar templates, must be a dictionary that maps document names | ||
# to template names. | ||
# | ||
# The default sidebars (for documents that don't match any pattern) are | ||
# defined by theme itself. Builtin themes are using these templates by | ||
# default: ``['localtoc.html', 'relations.html', 'sourcelink.html', | ||
# 'searchbox.html']``. | ||
# | ||
# html_sidebars = {} | ||
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# -- Options for HTMLHelp output --------------------------------------------- | ||
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# Output file base name for HTML help builder. | ||
htmlhelp_basename = 'pyoddoc' | ||
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# -- Options for LaTeX output ------------------------------------------------ | ||
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latex_elements = { | ||
# The paper size ('letterpaper' or 'a4paper'). | ||
# | ||
# 'papersize': 'letterpaper', | ||
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# The font size ('10pt', '11pt' or '12pt'). | ||
# | ||
# 'pointsize': '10pt', | ||
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# Additional stuff for the LaTeX preamble. | ||
# | ||
# 'preamble': '', | ||
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# Latex figure (float) alignment | ||
# | ||
# 'figure_align': 'htbp', | ||
} | ||
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# Grouping the document tree into LaTeX files. List of tuples | ||
# (source start file, target name, title, | ||
# author, documentclass [howto, manual, or own class]). | ||
latex_documents = [ | ||
(master_doc, 'pyod.tex', 'pyod Documentation', | ||
'Yue Zhao', 'manual'), | ||
] | ||
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# -- Options for manual page output ------------------------------------------ | ||
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# One entry per manual page. List of tuples | ||
# (source start file, name, description, authors, manual section). | ||
man_pages = [ | ||
(master_doc, 'pyod', 'pyod Documentation', | ||
[author], 1) | ||
] | ||
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# -- Options for Texinfo output ---------------------------------------------- | ||
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# Grouping the document tree into Texinfo files. List of tuples | ||
# (source start file, target name, title, author, | ||
# dir menu entry, description, category) | ||
texinfo_documents = [ | ||
(master_doc, 'pyod', 'pyod Documentation', | ||
author, 'pyod', 'One line description of project.', | ||
'Miscellaneous'), | ||
] | ||
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# -- Extension configuration ------------------------------------------------- | ||
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# -- Options for intersphinx extension --------------------------------------- | ||
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# Example configuration for intersphinx: refer to the Python standard library. | ||
intersphinx_mapping = {'https://docs.python.org/': None} |
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examples package | ||
================ | ||
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Submodules | ||
---------- | ||
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examples.abod\_example module | ||
----------------------------- | ||
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.. automodule:: examples.abod_example | ||
:members: | ||
:undoc-members: | ||
:show-inheritance: | ||
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examples.comb\_example module | ||
----------------------------- | ||
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.. automodule:: examples.comb_example | ||
:members: | ||
:undoc-members: | ||
:show-inheritance: | ||
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examples.hbos\_example module | ||
----------------------------- | ||
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.. automodule:: examples.hbos_example | ||
:members: | ||
:undoc-members: | ||
:show-inheritance: | ||
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examples.iforest\_example module | ||
-------------------------------- | ||
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.. automodule:: examples.iforest_example | ||
:members: | ||
:undoc-members: | ||
:show-inheritance: | ||
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examples.knn\_example module | ||
---------------------------- | ||
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.. automodule:: examples.knn_example | ||
:members: | ||
:undoc-members: | ||
:show-inheritance: | ||
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examples.lof\_example module | ||
---------------------------- | ||
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.. automodule:: examples.lof_example | ||
:members: | ||
:undoc-members: | ||
:show-inheritance: | ||
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examples.ocsvm\_example module | ||
------------------------------ | ||
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.. automodule:: examples.ocsvm_example | ||
:members: | ||
:undoc-members: | ||
:show-inheritance: | ||
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Module contents | ||
--------------- | ||
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.. automodule:: examples | ||
:members: | ||
:undoc-members: | ||
:show-inheritance: |
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.. pyod documentation master file, created by | ||
sphinx-quickstart on Sun May 27 10:56:38 2018. | ||
You can adapt this file completely to your liking, but it should at least | ||
contain the root `toctree` directive. | ||
PyOD Documentation | ||
================================ | ||
Python Outlier Detection (PyOD) is a Python-based toolkit to identify outliers in data with both unsupervised and supervised algorithms. | ||
It strives to provide unified APIs across for different anomaly detection algorithms. | ||
The toolkit consists of three major groups of functionalities: | ||
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1. Outlier detection algorithms | ||
2. Outlier ensemble frameworks | ||
3. Outlier detection utility functions | ||
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.. toctree:: | ||
:maxdepth: 2 | ||
:caption: Contents: | ||
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install | ||
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================== | ||
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* :ref:`genindex` | ||
* :ref:`modindex` | ||
* :ref:`search` |
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============ | ||
Installation | ||
============ | ||
It is advised to use **pip** to install the latest version: | ||
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At the command line: | ||
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.. code-block:: bash | ||
pip install pyod | ||
pip install --upgrade pyod | ||
or | ||
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.. code-block:: bash | ||
pip install pyod==x.y.z | ||
Please check the version number(x.y.z) is consistent with the current version number. Pypi can be unstable sometimes. | ||
Alternatively, downloading/cloning the `Github repository <https://github.com/yzhao062/Pyod/>`_ also works. | ||
You could unzip the files and execute the following command in the folder where the files get decompressed. | ||
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Library Dependency (work only with **Python 3**): | ||
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* scipy>=0.19.1 | ||
* pandas>=0.21 | ||
* numpy>=1.13 | ||
* scikit_learn>=0.19.1 | ||
* matplotlib>=2.0.2 (optional but required for running examples) |
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@ECHO OFF | ||
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pushd %~dp0 | ||
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REM Command file for Sphinx documentation | ||
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if "%SPHINXBUILD%" == "" ( | ||
set SPHINXBUILD=sphinx-build | ||
) | ||
set SOURCEDIR=. | ||
set BUILDDIR=_build | ||
set SPHINXPROJ=pyod | ||
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if "%1" == "" goto help | ||
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%SPHINXBUILD% >NUL 2>NUL | ||
if errorlevel 9009 ( | ||
echo. | ||
echo.The 'sphinx-build' command was not found. Make sure you have Sphinx | ||
echo.installed, then set the SPHINXBUILD environment variable to point | ||
echo.to the full path of the 'sphinx-build' executable. Alternatively you | ||
echo.may add the Sphinx directory to PATH. | ||
echo. | ||
echo.If you don't have Sphinx installed, grab it from | ||
echo.http://sphinx-doc.org/ | ||
exit /b 1 | ||
) | ||
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%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% | ||
goto end | ||
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:help | ||
%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% | ||
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:end | ||
popd |
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Pyod | ||
==== | ||
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.. toctree:: | ||
:maxdepth: 4 | ||
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examples | ||
pyod | ||
setup |
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