GLM + random effects modeling of OTU counts
This repository contains a single commented R script that walks the user through application of MCMC.OTU R package and contains some useful tricks for principal coordinate analysis. Paper presenting the method and describing the theory behind it:
Green. E.A., Davies, S.W., Matz. M.V., M Medina, M. Quantifying cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico. PeerJ 2014, 2:e386.