fixes #1 removing call_end_date from notebook

zambujo · Mar 16, 2019 · 6b689d6 · 6b689d6
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diff --git a/.gitignore b/.gitignore
@@ -0,0 +1,5 @@
+*.rds.bz2
+*.~lock*
+*.Rhistory
+*.RData
+notebook/peerreview_cache/
diff --git a/README.md b/README.md
@@ -2,7 +2,7 @@
 
 ### Synopsis
 
-Data analysis notebook subsequent to [this abstract](https://peerreviewcongress.org/prc17-0280) presented at the [International Congress on Peer Review and Scientific Publication](https://peerreviewcongress.org). The notebook also details the statistical analysis of results published in [PeerJ](https://peerj.com/preprints/27587).  Please find the corresponding data at [Zenodo](https://zenodo.org/record/2592509).
+Data analysis notebook subsequent to [this abstract](https://peerreviewcongress.org/prc17-0280) presented at the [International Congress on Peer Review and Scientific Publication](https://peerreviewcongress.org). The notebook provides the statistical analyses presented at [PeerJ](https://peerj.com/preprints/27587).  The corresponding data is available at [Zenodo](https://zenodo.org/record/2592509).
 
 ### License
 

diff --git a/index.html b/index.html
diff --git a/peerreview_files/bowser-1.9.3/bowser.min.js → index_files/bowser-1.9.3/bowser.min.js b/peerreview_files/bowser-1.9.3/bowser.min.js → index_files/bowser-1.9.3/bowser.min.js
diff --git a/index_files/distill-2.2.21/template.v2.js b/index_files/distill-2.2.21/template.v2.js
diff --git a/index_files/figure-html5/gender-applicants-1.png b/index_files/figure-html5/gender-applicants-1.png
diff --git a/index_files/figure-html5/gender-correlations-1.png b/index_files/figure-html5/gender-correlations-1.png
diff --git a/index_files/figure-html5/gender-reviewers-1.png b/index_files/figure-html5/gender-reviewers-1.png
diff --git a/index_files/figure-html5/means-affiliation-1.png b/index_files/figure-html5/means-affiliation-1.png
diff --git a/index_files/figure-html5/means-age-1.png b/index_files/figure-html5/means-age-1.png
diff --git a/index_files/figure-html5/means-age-update-1.png b/index_files/figure-html5/means-age-update-1.png
diff --git a/index_files/figure-html5/means-nationality-1.png b/index_files/figure-html5/means-nationality-1.png
diff --git a/index_files/figure-html5/means-topic-1.png b/index_files/figure-html5/means-topic-1.png
diff --git a/index_files/figure-html5/nomination-1.png b/index_files/figure-html5/nomination-1.png
diff --git a/index_files/figure-html5/origin-1.png b/index_files/figure-html5/origin-1.png
diff --git a/index_files/figure-html5/shares-1.png b/index_files/figure-html5/shares-1.png
diff --git a/peerreview_files/jquery-1.11.3/jquery.min.js → index_files/jquery-1.11.3/jquery.min.js b/peerreview_files/jquery-1.11.3/jquery.min.js → index_files/jquery-1.11.3/jquery.min.js
diff --git a/peerreview_files/kePrint-0.0.1/kePrint.js → index_files/kePrint-0.0.1/kePrint.js b/peerreview_files/kePrint-0.0.1/kePrint.js → index_files/kePrint-0.0.1/kePrint.js
diff --git a/...w_files/pagedtable-1.1/css/pagedtable.css → ...x_files/pagedtable-1.1/css/pagedtable.css b/...w_files/pagedtable-1.1/css/pagedtable.css → ...x_files/pagedtable-1.1/css/pagedtable.css
diff --git a/...iew_files/pagedtable-1.1/js/pagedtable.js → index_files/pagedtable-1.1/js/pagedtable.js b/...iew_files/pagedtable-1.1/js/pagedtable.js → index_files/pagedtable-1.1/js/pagedtable.js
diff --git a/...iles/webcomponents-2.0.0/webcomponents.js → ...iles/webcomponents-2.0.0/webcomponents.js b/...iles/webcomponents-2.0.0/webcomponents.js → ...iles/webcomponents-2.0.0/webcomponents.js
diff --git a/install.R b/install.R
@@ -0,0 +1,4 @@
+#!/usr/bin/env Rscript
+library(rmarkdown)
+rmarkdown::render(input = "notebook/peerreview.Rmd",
+                  output_file = "../index.html")
diff --git a/notebook/graphics.r → notebook/boilerplate.R b/notebook/graphics.r → notebook/boilerplate.R
@@ -1,3 +1,33 @@
+# ----- install the following packages
+packages <- c(
+  "assertthat",
+  "broom",
+  "extrafont",
+  "ggrepel",
+  "ggpubr",
+  "gridExtra",
+  "Hmisc",
+  "lme4",
+  "lubridate",
+  "kableExtra",
+  "knitr",
+  "magrittr",
+  "plyr",
+  "readr",
+  "rmarkdown",
+  "rio",
+  "sjmisc",
+  "sjPlot",
+  "tidyverse",
+  "devtools"
+)
+
+if (!require(pacman)) install.packages("pacman")
+pacman::p_load(char = packages)
+# devtools::install_github("strengejacke/ggeffects")
+
+# ---- adding to ggplot minimal theme...
+
 multipanel_theme <- function(my_ggplot) {
   theme_minimal(base_size = 10) +
     theme(

diff --git a/notebook/make.r b/notebook/make.r
diff --git a/notebook/packages.r b/notebook/packages.r