fix: no nan in function call

zavolanlab · May 12, 2023 · c3a19f0 · c3a19f0
1 parent 2bdf65d
commit c3a19f0
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/rules/htsinfer.smk b/workflow/rules/htsinfer.smk
@@ -8,7 +8,7 @@ config.setdefault("records", 100000)
 
 
 # global variables
-samples = pd.read_csv(config["samples"], header=0, index_col=0, sep="\t")
+samples = pd.read_csv(config["samples"], header=0, index_col=0, sep="\t", keep_default_na=False)
 OUT_DIR = config["outdir"]
 LOG_DIR = os.path.join(OUT_DIR, "logs")
 CLUSTER_LOG = os.path.join(LOG_DIR, "cluster_logs")