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MulledDockerfile
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MulledDockerfile
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FROM debian:10-slim as base
# $ docker build -f MulledDockerfile -t bioconda/mulled_container:latest
# $ docker run --rm -it bioconda/mulled_container:latest /bin/bash
# $ docker push bioconda/mulled_container:latest
#
ENV LANG=C.UTF-8 LC_ALL=C.UTF-8
ENV PATH /opt/conda/bin:$PATH
FROM base as builder
RUN apt-get update -qq --fix-missing && \
apt-get install -qqy --no-install-recommends bzip2 ca-certificates curl && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
RUN curl -sL https://repo.anaconda.com/miniconda/Miniconda3-py37_4.8.3-Linux-x86_64.sh -o ~/miniconda.sh && \
/bin/bash ~/miniconda.sh -b -p /opt/conda && \
rm ~/miniconda.sh && \
CONDA_AGGRESSIVE_UPDATE_PACKAGES= CONDA_AUTO_UPDATE_CONDA=0 \
conda install -y conda-forge::tini && \
conda clean -ya
FROM base
COPY --from=builder /opt/conda /opt/conda
RUN ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && \
echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && \
echo "conda activate base" >> ~/.bashrc && \
{ conda config --remove repodata_fns current_repodata.json || true ; } && \
conda config --prepend repodata_fns repodata.json
COPY ./Mulled_entrypoint /opt/container-entrypoint
ENTRYPOINT [ "/opt/conda/bin/tini", "--", "/opt/container-entrypoint"]
CMD [ "/bin/bash" ]