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--- | ||
output: github_document | ||
--- | ||
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<!-- README.md is generated from README.Rmd. Please edit that file --> | ||
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```{r, include = FALSE} | ||
knitr::opts_chunk$set( | ||
collapse = TRUE, | ||
comment = "#>", | ||
fig.path = "man/figures/README-", | ||
out.width = "100%" | ||
) | ||
``` | ||
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# sgolay | ||
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<!-- badges: start --> | ||
[![CRAN status](https://www.r-pkg.org/badges/version/sgolay)](https://CRAN.R-project.org/package=sgolay) | ||
[![R-CMD-check](https://github.com/zeehio/sgolay/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/zeehio/sgolay/actions/workflows/R-CMD-check.yaml) | ||
[![Codecov test coverage](https://codecov.io/gh/zeehio/sgolay/branch/main/graph/badge.svg)](https://app.codecov.io/gh/zeehio/sgolay?branch=main) | ||
<!-- badges: end --> | ||
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The goal of sgolay is to offer efficient and vectorized Savitzky-Golay filters. | ||
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## Installation | ||
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You can install the CRAN version with | ||
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```r | ||
# install.packages("sgolay") | ||
``` | ||
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Or you can install the development version of sgolay from [GitHub](https://github.com/) with: | ||
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``` r | ||
# install.packages("remotes") | ||
remotes::install_github("zeehio/sgolay") | ||
``` | ||
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## Benchmark | ||
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`sgolay` is faster than `signal`, especially on either larger filter lengths or when | ||
applied on matrices, since it uses the Fast Fourier Transform and avoids several | ||
memory copies and extra allocations. | ||
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```{r} | ||
library(sgolay) | ||
x <- matrix(runif(1000*1000), nrow = 1000, ncol = 1000) | ||
filt <- signal::sgolay(p = 2, n = 51) | ||
timing <- bench::mark( | ||
signal = apply(x, 2L, function(s) signal::sgolayfilt(s, filt)), | ||
sgolay = sgolay::sgolayfilt(x, filt), | ||
min_iterations = 50 | ||
) | ||
plot(timing, type = 'ridge') | ||
``` | ||
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<!-- README.md is generated from README.Rmd. Please edit that file --> | ||
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# sgolay | ||
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||
<!-- badges: start --> | ||
|
||
[![CRAN | ||
status](https://www.r-pkg.org/badges/version/sgolay)](https://CRAN.R-project.org/package=sgolay) | ||
[![R-CMD-check](https://github.com/zeehio/sgolay/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/zeehio/sgolay/actions/workflows/R-CMD-check.yaml) | ||
[![Codecov test | ||
coverage](https://codecov.io/gh/zeehio/sgolay/branch/main/graph/badge.svg)](https://app.codecov.io/gh/zeehio/sgolay?branch=main) | ||
<!-- badges: end --> | ||
|
||
The goal of sgolay is to offer efficient and vectorized Savitzky-Golay | ||
filters. | ||
|
||
## Installation | ||
|
||
You can install the CRAN version with | ||
|
||
``` r | ||
# install.packages("sgolay") | ||
``` | ||
|
||
Or you can install the development version of sgolay from | ||
[GitHub](https://github.com/) with: | ||
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||
``` r | ||
# install.packages("remotes") | ||
remotes::install_github("zeehio/sgolay") | ||
``` | ||
|
||
## Benchmark | ||
|
||
`sgolay` is faster than `signal`, especially on either larger filter | ||
lengths or when applied on matrices, since it uses the Fast Fourier | ||
Transform and avoids several memory copies and extra allocations. | ||
|
||
``` r | ||
library(sgolay) | ||
x <- matrix(runif(1000*1000), nrow = 1000, ncol = 1000) | ||
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filt <- signal::sgolay(p = 2, n = 51) | ||
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timing <- bench::mark( | ||
signal = apply(x, 2L, function(s) signal::sgolayfilt(s, filt)), | ||
sgolay = sgolay::sgolayfilt(x, filt), | ||
min_iterations = 50 | ||
) | ||
#> Warning: Some expressions had a GC in every iteration; so filtering is disabled. | ||
plot(timing, type = 'ridge') | ||
#> Loading required namespace: tidyr | ||
#> Picking joint bandwidth of 0.0135 | ||
``` | ||
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<img src="man/figures/README-unnamed-chunk-2-1.png" width="100%" /> |
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