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When running zephir generate under Windows, we have that paths in the config.m4 file use \ instead of /.
For example, with the RubixML/Tensor project we have these lines in the updated config.m4 file:
AC_DEFINE(HAVE_TENSOR, 1, [Whether you have Tensor])
tensor_sources="tensor.c kernel/main.c kernel/memory.c kernel/exception.c kernel/debug.c kernel/backtrace.c kernel/object.c kernel/array.c kernel/string.c kernel/fcall.c kernel/require.c kernel/file.c kernel/operators.c kernel/math.c kernel/concat.c kernel/variables.c kernel/filter.c kernel/iterator.c kernel/time.c kernel/exit.c tensor\arithmetic.zep.c
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