remove ete2 and add docker file

Dockerfile

@@ -1,9 +1,81 @@
-FROM python:3.5-slim
-MAINTAINER Jiajie Zhang <bestzhangjiajie@gmail.com>
+FROM ubuntu:16.04
+
+ENV DEBIAN_FRONTEND noninteractive
+
+RUN apt-get update -y
+RUN apt-get install -y --no-install-recommends \
+        apt-transport-https \
+        build-essential \
+        git \
+        libcurl4-openssl-dev \
+        libxml2-dev \
+        software-properties-common \
+        libreadline-dev \
+        libpcre++-dev \
+        libblas-dev \
+        liblapack-dev \
+        libatlas-base-dev \
+        gfortran \
+        liblzma-dev \
+        libbz2-dev \
+        locales \
+        zlib1g-dev \
+        xserver-xorg \ 
+        xdm \
+        xfonts-base \ 
+        xfonts-100dpi \
+        xfonts-75dpi
+
+# Locales
+RUN locale-gen en_GB.UTF-8
+ENV LANG en_GB.UTF-8
+ENV LANGUAGE en_GB:en
+ENV LC_ALL en_GB.UTF-8
+
+# Python 3.6
+RUN add-apt-repository -y ppa:deadsnakes/ppa && \
+        apt remove -y python3-apt && \
+        apt-get update && \
+        apt-get install -y --no-install-recommends \
+                python3.6 python3.6-dev python3-pip python3-apt python3-tk \ 
+                python3-setuptools \
+                software-properties-common python3-software-properties && \
+        rm /usr/bin/python3 && \
+        ln -s /usr/bin/python3.6 /usr/bin/python3 && \
+        cp /usr/lib/python3/dist-packages/apt_pkg.cpython-35m-x86_64-linux-gnu.so \
+            /usr/lib/python3/dist-packages/apt_pkg.so
+
+RUN update-alternatives --install /usr/bin/python python /usr/bin/python3.6 1
+RUN update-alternatives --install /usr/bin/pip pip /usr/bin/pip3 1
+
+# R 3.3
+#RUN apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9 && \
+#    add-apt-repository 'deb [arch=amd64,i386] https://cran.rstudio.com/bin/linux/ubuntu xenial/' && \
+#    apt-get update && \
+#    apt-get install -y --no-install-recommends \
+#        r-recommended=3.3.3-1xenial0 r-base=3.3.3-1xenial0
+
+#RUN R -e "install.packages(c('robustbase', 'rrcov'), repos='http://cran.us.r-project.org')"
+
+#RUN R -e "source('http://bioconductor.org/biocLite.R'); \
+#         biocLite(''); \
+#         biocLite('GEOquery'); \
+#         biocLite('data.table'); \
+#         biocLite('rhdf5'); \
+#         biocLite('limma'); \
+#         biocLite('oligo'); \
+#         biocLite('ArrayExpress'); \
+#         biocLite('magrittr'); \
+#         biocLite('dplyr'); \
+#         biocLite('AnnotationDbi'); \
+#         biocLite('WGCNA');"
+
+# RUN R -e "install.packages(c('INSPIRE', 'MASS', 'lme4', 'lmerTest'), repos='http://cran.us.r-project.org')"
 
-COPY . /app
 RUN pip3 install --upgrade pip
-RUN pip3 install --no-cache-dir -r /app/requirements.txt
+RUN pip3 install wheel
+RUN pip3 install numpy scipy docutils six pytest matplotlib lxml PyQt5 ete3
 
+COPY . /app
 WORKDIR /app
 RUN python3 setup.py install