Zhang Laboratory URI

Dr. Ying Zhang’s laboratory of Computational Molecular Ecology at the University of Rhode Island

  • Curation and analysis of metabolic models

    Python 23 11 GPL-3.0 Updated Dec 1, 2017
  • Collection of PSAMM metabolic models converted from publicly available models

    3 5 Updated Aug 21, 2017
  • Import tool for PSAMM containing importers for SBML format and a number of published Excel formats

    Python 2 4 GPL-3.0 Updated Jun 30, 2017
  • Model files for the PSAMM tutorial

    Updated Jun 30, 2017
  • Metabolic model of the Shewanella piezotolerans WP3

    1 1 Updated Jun 23, 2017
  • PSAMM import module for MATLAB models

    Python Updated Mar 7, 2017
  • mothur

    Forked from mothur/mothur

    Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.

    C++ 68 GPL-3.0 Updated Dec 5, 2014