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installation fault #114
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Which system did you use? More information will be helpful.
…On Tue, Nov 17, 2020 at 10:25 AM flapa86 ***@***.***> wrote:
Hi, I have this error
make[1]: Entering directory /opt/install-bin/rvtests-master/src' g++ -o
/opt/install-bin/rvtests-master/executable/rvtest Main.o DataConsolidator.o
ModelFitter.o TabixUtil.o ModelManager.o ModelParser.o Model.o
GenotypeExtractor.o VCFGenotypeExtractor.o BGenGenotypeExtractor.o
KGGGenotypeExtractor.o DataLoader.o GenotypeCounter.o SingleDummy.o -O2
-DNDEBUG -D__STDC_LIMIT_MACROS -std=c++0x -Wall -Wno-unused-function
-fopenmp -DGIT_VERSION="\"Unknown\"" -D_USE_KNETFILE -static
/opt/install-bin/rvtests-master/regression/lib-regression.a
/opt/install-bin/rvtests-master/libVcf/lib-vcf.a
/opt/install-bin/rvtests-master/libBgen/lib-bgen.a
/opt/install-bin/rvtests-master/base/lib-base.a
/opt/install-bin/rvtests-master/libsrc/lib-goncalo.a
/opt/install-bin/rvtests-master/third/samtools/bcftools/libbcf.a
/opt/install-bin/rvtests-master/third/samtools/libbam.a
/opt/install-bin/rvtests-master/third/tabix/libtabix.a
/opt/install-bin/rvtests-master/third/pcre/lib/libpcreposix.a
/opt/install-bin/rvtests-master/third/pcre/lib/libpcre.a
/opt/install-bin/rvtests-master/third/gsl/lib/libgsl.a
/opt/install-bin/rvtests-master/third/zlib/libz.a
/opt/install-bin/rvtests-master/third/bzip2/libbz2.a
/opt/install-bin/rvtests-master/third/nlopt/lib/libnlopt.a
/opt/install-bin/rvtests-master/third/sqlite/lib/libsqlite3.a
/opt/install-bin/rvtests-master/third/zstd/lib/libzstd.a
/opt/install-bin/rvtests-master/third/cnpy/libcnpy.a -lm -lpthread /bin/ld:
cannot find -lpthread /bin/ld: cannot find -lstdc++ /bin/ld: cannot find
-lm /bin/ld: cannot find -lpthread /bin/ld: cannot find -lc collect2:
error: ld returned 1 exit status make[1]: ***
[/opt/install-bin/rvtests-master/executable/rvtest] Error 1 make[1]:
Leaving directory /opt/install-bin/rvtests-master/src'
make: *** [release] Error 2
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|
Linux 3.10.0-1062.9.1.el7.x86_64 (RedHat system) |
@flapa86 Ref: |
@zhanxw
I used your latest source codes (directly downloaded from github main-page) to conduct make process. Any help would be appreciated. |
Hi, I have this error
fatal: Not a git repository (or any of the parent directories): .git
make -C /opt/install-bin/rvtests-master/src release
fatal: Not a git repository (or any of the parent directories): .git
.....
/bin/ld: cannot find -lpthread
/bin/ld: cannot find -lstdc++
/bin/ld: cannot find -lm
/bin/ld: cannot find -lpthread
/bin/ld: cannot find -lc
collect2: error: ld returned 1 exit status
make[1]: *** [/opt/install-bin/rvtests-master/executable/rvtest] Error 1
make[1]: Leaving directory `/opt/install-bin/rvtests-master/src'
make: *** [release] Error 2
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