-
Notifications
You must be signed in to change notification settings - Fork 7
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
how to edit the parameter (-d DIS Position range near start codon or stop codon)? #14
Comments
Try |
Hi, the test seq length is ~150nt, which is the RNA_seq data. |
The problem may be that python argparse takes the minus character '-' in '-20,40' as sign of another option parameter instead of argument value.
Try `-d-20,40` (no space after d) or `-d ' -20,40'` (add quotes and another space before '-').
在 2021-03-17 10:35:08,"shwdmsh" ***@***.***> 写道:
Hi, the test seq length is ~150nt, which is the RNA_seq data.
When I use Riboseq data,the test2 seq length is about 28nt.
I use the command :ribotish quality -b test.sort.bam -p 8 -d -20,40 -g genomic.gtf
some error information:ribotish quality: error: argument -d: expected one argument
However,I use the command : ribotish quality -b test.sort.bam -p 8 -g genomic.gtf, I can get the quality pdf file
—
You are receiving this because you commented.
Reply to this email directly, view it on GitHub, or unsubscribe.
|
Hi,
If I want to get the range of -20,40 near start codon or stop codon ,how to do ?
My command as follows:
ribotish quality -b test.sort.bam -p 8 -l 145,151 -d 60 --nom0 -g genomic.gtf
some error information:IndexError: tuple index out of range
The text was updated successfully, but these errors were encountered: