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ribotish quality: error: argument -d: expected one argument #18

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yycunc opened this issue Jul 1, 2021 · 2 comments
Open

ribotish quality: error: argument -d: expected one argument #18

yycunc opened this issue Jul 1, 2021 · 2 comments

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@yycunc
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yycunc commented Jul 1, 2021

Hi, when I wanted to use option -d to define the position range near start codon or stop codon, I met such an error:

ribotish quality: error: argument -d: expected one argument

My command line is:

ribotish quality -b D0_1.unique_mapped.sorted.bam -g Mus_musculus.GRCm39.103.chr.gtf -d -20,60

Would you please show me how to customize the position range?

Thanks a lot!

@zhpn1024
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zhpn1024 commented Jul 2, 2021

The minus - sign causes python to treat it as a new option. See the following link for solution
https://github.com/zhpn1024/ribotish/issues/14#issuecomment-801547509

@zhpn1024
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zhpn1024 commented Jul 2, 2021

#14

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