xdot - dependency is not working

[brainbow1]

I installed zim wiki in debian bullseye, via the debian repositories.
Before that I installed xdot and graphviz from the debian repositories.

When I go to settings > add ons / extensions > link structure add on
it shows me:
graphviz - OK (green)
xdot - missing / not fulfilled (red)

sorry for my bad english... im using the german version of zim.

Hope for any help.

best regards!

[jaap-karssenberg]

The plugin tries to import xdot as a python library. Please check you have the python3 version installed. You can test it from the commandline with "python3 -m xdot" which may return an error but should at least find the module.

…

-- Jaap

On Sat, Jun 12, 2021 at 6:05 PM brainbow1 ***@***.***> wrote: I installed zim wiki in debian bullseye, via the debian repositories. Before that I installed *xdot* and *graphviz* from the debian repositories. When I go to settings > add ons / extensions > link structure add on it shows me: graphviz - OK (green) xdot - missing / not fulfilled (red) sorry for my bad english... im using the german version of zim. Hope for any help. best regards! — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#1496>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAJQYHXXPEI2NXMVJUK46WTTSOATLANCNFSM46S3UIKQ> .

[brainbow1]

thank u for the answer!
I checked that terminal command:

~$ python3 -m xdot Traceback (most recent call last): File "/usr/lib/python3.9/runpy.py", line 188, in _run_module_as_main mod_name, mod_spec, code = _get_module_details(mod_name, _Error) File "/usr/lib/python3.9/runpy.py", line 147, in _get_module_details return _get_module_details(pkg_main_name, error) File "/usr/lib/python3.9/runpy.py", line 111, in _get_module_details __import__(pkg_name) File "/usr/lib/python3/dist-packages/xdot/__init__.py", line 26, in <module> from . import ui File "/usr/lib/python3/dist-packages/xdot/ui/__init__.py", line 3, in <module> from .window import DotWidget, DotWindow File "/usr/lib/python3/dist-packages/xdot/ui/window.py", line 40, in <module> from . import actions File "/usr/lib/python3/dist-packages/xdot/ui/actions.py", line 21, in <module> from xdot.ui.elements import Jump File "/usr/lib/python3/dist-packages/xdot/ui/elements.py", line 29, in <module> import numpy ModuleNotFoundError: No module named 'numpy'

python3 is installed in version 3.9.2-3

[jaap-karssenberg]

Looks like an unsatisfied dependency on the "numpy" package - might be worth reporting towards the debian packager for xdot.

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On Fri, Jun 18, 2021 at 10:14 AM brainbow1 ***@***.***> wrote: thank u for the answer! I checked that terminal command: ~$ python3 -m xdot Traceback (most recent call last): File "/usr/lib/python3.9/runpy.py", line 188, in _run_module_as_main mod_name, mod_spec, code = _get_module_details(mod_name, _Error) File "/usr/lib/python3.9/runpy.py", line 147, in _get_module_details return _get_module_details(pkg_main_name, error) File "/usr/lib/python3.9/runpy.py", line 111, in _get_module_details __import__(pkg_name) File "/usr/lib/python3/dist-packages/xdot/__init__.py", line 26, in <module> from . import ui File "/usr/lib/python3/dist-packages/xdot/ui/__init__.py", line 3, in <module> from .window import DotWidget, DotWindow File "/usr/lib/python3/dist-packages/xdot/ui/window.py", line 40, in <module> from . import actions File "/usr/lib/python3/dist-packages/xdot/ui/actions.py", line 21, in <module> from xdot.ui.elements import Jump File "/usr/lib/python3/dist-packages/xdot/ui/elements.py", line 29, in <module> import numpy ModuleNotFoundError: No module named 'numpy' — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#1496 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAJQYHVDJ2QTZ5E2RYU6X43TTL55VANCNFSM46S3UIKQ> .

[brainbow1]

alright will do that, thank u for the information!!

[stefanor]

Thanks for the email :)

I missed the addition of numpy in 1.2 (which was silly, it's the first line of the diff).

It would be nice to have dependencies documented in the setuptools metadata, to avoid these kind of mistakes.

[brainbow1]

now I got the update with numpy and xdot via respositories of debian 11! thank u so much for ur effort! all the best!