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README.md

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Tutorials:

  • Tutorial 0: Here's a Hello Imaris tutorial showing how to link Imaris and jupyter-notebook.

  • Tutorial 1: Number of cells vs time tutorial showing how to perform spot operations (counting unique spots / timepoints) using numpy and plotting the result using matplotlib.

  • Tutorial 2: Plotting tracks tutorial showing how to extract track data (position and statistics) and plot various types of graphs (2-D data for now).

  • Tutorial 3: Tracking maggots tutorial showing how to load a video in Python (hackish way using FFMpeg), do some image processing to remove the background, then send the data to Imaris and track the maggots using surfaces.

  • Tutorial 4: Working with surfaces tutorial showing how to pull surfaces from Imaris. TODO: Will flesh this one out to show how to send surfaces back into Imaris.