-
Notifications
You must be signed in to change notification settings - Fork 4
Home
Egor Zindy edited this page Aug 3, 2018
·
6 revisions
Here I will try to document my Imaris related Python libraries, Imaris setup, as well as my Python XTensions.
In particular,
- BridgeLib is a library I independently wrote to interface Python code with Imaris.
- TkDialog is the library I use to rapidly build simple Tk user interfaces for my XTensions.
- XTIPython is an XTension to use Imaris with Jupyter-notebook (IPython).
- XTInteractiveShell is the same idea but a much simpler Python REPL hook into Imaris.
- XTAtrous is a GUI for my libatrous library (Ondelettes a trous).
- XTTrackPlot is a GUI for generating (vector) flower plots suitable for publications.
- XTCalculator is a channel calculator of simple channel operations.
- RDP Multi-user Imaris: Imaris on a Windows Server, accessed through RDP thinclients. Anyone else trying to do this? For example (as in our case), Imaris running on the Acquifer Hive? I will try to document as much as I can here. Also, I would love to hear how other people are trying to solve this.
-
Tutorial 0: Here's a Hello Imaris tutorial showing how to link Imaris and jupyter-notebook.
-
Tutorial 1: Number of cells vs time tutorial showing how to perform spot operations (counting unique spots / timepoints) using numpy and plotting the result using matplotlib.
All my code will be released under a permissive (Apache V2) license.