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zktuong committed May 20, 2022
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7 changes: 6 additions & 1 deletion docs/README.md
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![](notebooks/img/dandelion_logo_illustration.png)

Hi there! I have put together a python package for analyzing single cell BCR/V(D)J data from 10x Genomics 5' solution! It streamlines the pre-processing, leveraging some tools from immcantation suite, and integrates with scanpy/anndata for single-cell BCR analysis. It also includes a couple of functions for visualization. Try it out on Google Colab above!
Hi there! I have put together a python package for analyzing single cell BCR/V(D)J data from 10x Genomics 5' solution! It streamlines the pre-processing, leveraging some tools from immcantation suite, and integrates with scanpy/anndata for single-cell BCR analysis. It also includes a couple of functions for visualization. Try it out on [![Open in Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/zktuong/dandelion/blob/master/container/dandelion_singularity.ipynb) !


## Overview
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The raw files for the examples can be downloaded from 10X's Single Cell Immune Profiling datasets [website](https://support.10xgenomics.com/single-cell-vdj/datasets).

<div style="position: relative; padding-bottom: 56.25%; height: 0; overflow: hidden; max-width: 100%; height: auto;">
<iframe src="https://www.youtube.com/embed/pxz31b1iIFY" frameborder="0" allowfullscreen style="position: absolute; top: 0; left: 0; width: 100%; height: 100%;"></iframe>
</div>


## Installation

### Singularity container
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10 changes: 9 additions & 1 deletion docs/README.rst
Expand Up @@ -6,7 +6,7 @@ Hi there! I have put together a python package for analyzing single cell
BCR/V(D)J data from 10x Genomics 5' solution! It streamlines the
pre-processing, leveraging some tools from immcantation suite, and
integrates with scanpy/anndata for single-cell BCR analysis. It also
includes a couple of functions for visualization. Try it out on Google Colab above!
includes a couple of functions for visualization. Try it out on |Colab| !

Overview
--------
Expand All @@ -26,6 +26,14 @@ The raw files for the examples can be downloaded from 10X's Single Cell
Immune Profiling datasets
`website <https://support.10xgenomics.com/single-cell-vdj/datasets>`__.


.. raw:: html

<div style="position: relative; padding-bottom: 56.25%; height: 0; overflow: hidden; max-width: 100%; height: auto;">
<iframe src="https://www.youtube.com/embed/pxz31b1iIFY" frameborder="0" allowfullscreen style="position: absolute; top: 0; left: 0; width: 100%; height: 100%;"></iframe>
</div>


Installation
------------

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