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Update 3_dandelion_findingclones-10x_data.ipynb #328

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2 changes: 1 addition & 1 deletion docs/notebooks/3_dandelion_findingclones-10x_data.ipynb
Expand Up @@ -130,7 +130,7 @@
"metadata": {},
"source": [
"### Running `ddl.tl.find_clones`\n",
"The function will take a file path, a pandas `DataFrame` (for example if you've used pandas to read in the filtered file already), or a `Dandelion` class object. The default mode for calculation of junctional hamming distance is to use the CDR3 junction amino acid sequences, specified via the `key` option (`None` defaults to `junction_aa`). You can switch it to using CDR3 junction nucleotide sequences (`key = 'junction'`), or even the full V(D)J amino acid sequence (`key = 'sequence_alignment_aa`), as long as the column name exists in the `.data` slot.\n",
"The function will take a file path, a pandas `DataFrame` (for example if you've used pandas to read in the filtered file already), or a `Dandelion` class object. The default mode for calculation of junctional hamming distance is to use the CDR3 junction amino acid sequences, specified via the `key` option (`None` defaults to `junction_aa`). You can switch it to using CDR3 junction nucleotide sequences (`key = 'junction'`), or even the full V(D)J amino acid sequence (`key = 'sequence_alignment_aa'`), as long as the column name exists in the `.data` slot.\n",
"\n",
"If you want to use the alleles for defining V-J gene usuage, specify:\n",
"```python\n",
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