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plot_cpdb4 #37

Merged
merged 6 commits into from Aug 2, 2022
Merged

plot_cpdb4 #37

merged 6 commits into from Aug 2, 2022

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zktuong
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@zktuong zktuong commented Aug 1, 2022

new function! plot_cpdb4 very similar to plot_cpdb3 but some stylistic choices applied.

minor plotting bug fixes for plot_cpdb3.

refactored the weird character pattern to hopefully now catch more patterns more reliably.

changed version3 to degs_analysis to keep it consistent with the main cellphonedb mode.

now in plot_cpdb3 and plot_cpdb4, it tries and correct the directionality of the ligand/receptor arrows so ligands should always point to receptors. if both are receptors, it will use the original cellphonedb ordering.

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codecov bot commented Aug 1, 2022

Codecov Report

Merging #37 (20fe22a) into master (bb2c0fb) will increase coverage by 0.09%.
The diff coverage is 77.64%.

@@            Coverage Diff             @@
##           master      #37      +/-   ##
==========================================
+ Coverage   75.58%   75.68%   +0.09%     
==========================================
  Files           5        7       +2     
  Lines        1487     1748     +261     
==========================================
+ Hits         1124     1323     +199     
- Misses        363      425      +62     
Impacted Files Coverage Δ
R/plot_cpdb.R 67.30% <66.00%> (-3.07%) ⬇️
R/plot_cpdb4.R 72.24% <72.24%> (ø)
R/plot_cpdb2.R 81.34% <77.77%> (+1.62%) ⬆️
R/plot_cpdb3.R 78.36% <81.08%> (+0.26%) ⬆️
R/utils.R 86.23% <86.23%> (ø)

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@zktuong zktuong changed the title Plot cpdb3 update plot_cpdb4 Aug 1, 2022
@zktuong zktuong merged commit c60223a into master Aug 2, 2022
@zktuong zktuong deleted the plot_cpdb3_update branch August 2, 2022 09:24
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