v2.1.3

BUG FIXES

• Fix error in processing GenBank release notes that arose in GenBank release 252 (#47)

v2.1.2

BUG FIXES

• Fix spelling errors (4c0f9e4)
• Fix broken links (fddb4c2)
• Other minor fixes for submission to CRAN (43795b4, 325b74f)

v2.1.1

BUG FIXES

• Fix incorrect warning about max_tries (#45)

v2.1.0

BUG FIXES

• Fixed bug where restez_status() did not show correct file size (#32)
• Fixed frequent appearance of "Database is garbage-collected" warning (#33)
• Skip scanning of gzipped file if zgrep is not detected (3de4f95)

DOCUMENTATION

• Add "Accession filter" to "Tips and Tricks" (1e30498)
• Use markdown syntax for roxygen2 (ded1466)

NEW FEATURES

• Change use of restez_connect() and restez_disconnect(): they are no longer user-facing, and instead get run internally for each instance of connecting to the local database. Also, connection to DB is made in read-only mode, which should allow for multiple simultaneous processes to access the DB (#33, #35)
• Add ncbi_acc_get() to enable easier querying of GenBank accession numbers (#37, #43)
• Add max_tries argument to db_download() to automatically re-try download in the event of a drop in internet connectivity (#36, #42)
• Add dnabin argument to gb_sequence_get() to return sequences in ape DNAbin format (#38, #44)

v2.0.0

BUG FIXES

• Migrate to duckdb (#18, #26)

DOCUMENTATION

• Update to correct github repo (#28)

NEW FEATURES

• Add option to connect to database in read-only mode (91b85f6)

OTHER

• Switch CI from travis to github actions (9cc52e8)

v1.1.0

Bug fixes

• Fix bug where single extremely long sequence caused db_create() to die (#14)

New features

• Add ability to filter database by accession number upon creation (#25)

Other

• Change maintainer to Joel Nitta

Accepted on ROpenSci and CRAN

1.0.0

available on CRAN

Post-review 1

The package has been reviewed by ROpenSci. The package has been updated to respond to these reviews.

Pre-release for review

Pre-release version for review.