Releases: AlexandrovLab/SigProfilerMatrixGenerator
Releases · AlexandrovLab/SigProfilerMatrixGenerator
v1.2.26
v1.2.25
What's Changed
- v1.2.25: Add rn7 and resolve custom install tsb_BED path issue by @mdbarnesUCSD in #175
Full Changelog: v1.2.24...v1.2.25
v1.2.24
What's Changed
- Update v1.2.24: Fix ebv matrix generation by @mdbarnesUCSD in #174
Full Changelog: v1.2.23...v1.2.24
v1.2.23
What's Changed
Added to CLI:
- SV matrix generator
- CNV matrix generator
Additional changes:
- Added Dockerfile
- Modified reference_paths to accept a volume
- Upgrade to v1.2.23 by @mdbarnesUCSD in #173
Full Changelog: v1.2.22...v1.2.23
v1.2.22
What's Changed
- v1.2.22: CLI installs reference genomes using the ReferenceGenomeMana… by @mdbarnesUCSD in #170
Full Changelog: v1.2.21...v1.2.22
v1.2.21
What's Changed
- Add ReferenceGenomeManager that: by @mdbarnesUCSD in #169
- Remove benchmark script that was run in site-packages after a reference genome was installed
Full Changelog: v1.2.20...v1.2.21
v1.2.20
v1.2.19
v.1.2.18
Release Notes for v1.2.18
Enhancements
-
New Command-Line Interface (CLI):
- A new and intuitive CLI,
SigProfilerMatrixGenerator_CLI.py
, has been launched to facilitate user interactions. - This interface accommodates essential tasks such as
install
andmatrix_generator
. - Enhanced user control for saving/loading reference genomes with the addition of the
volume
parameter.
- A new and intuitive CLI,
-
Testing Improvements:
- Introduced additional tests to better validate the functionalities and ensure more reliable outcomes.
Additional Updates
-
File Naming Update: To resolve issues with CLI imports,
SigProfilerMatrixGenerator.py
has been renamed toMutationMatrixGenerator.py
. -
Documentation Refinement: The README has been revised to include the CLI updates.
-
Added a status badge to indicate the FTP server's uptime.
Limitations
- CLI and CNV/SV Support: Please note that the current version of the CLI does not support CNV/SV functionalities. We are actively working on this and will provide updates in future releases.
Version 1.2
Stable version after releasing a series of hotfixes for compatibility across the SigProfiler suite of tools along with the support for additional reference genomes, custom genome installations, and offline genome installations.