Skip to content
@Cibiv

CIBIV - Center for Integrative Bioinformatics Vienna

Popular repositories

  1. IQ-TREE IQ-TREE Public archive

    Efficient phylogenomic software by maximum likelihood

    C++ 181 45

  2. NextGenMap NextGenMap Public

    NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows …

    C++ 85 9

  3. Teaser Teaser Public

    A tool to benchmark mappers and different parameters within minutes

    HTML 43 9

  4. trumicount trumicount Public

    Correctly counting molecules using unique molecular identifiers (UMIs)

    TeX 9 1

  5. BODscore BODscore Public

    Scoring method for identified SNPs

    C 4

  6. gwpcR gwpcR Public

    Corrects UMI-based NGS data for phantom UMIs and lost molecules using a mechanistic model of UMI-based experiments

    R 3

Repositories

Showing 10 of 18 repositories
  • Python 0 0 0 0 Updated Apr 30, 2024
  • Cibiv.github.io Public

    CIBIV website

    HTML 2 0 0 0 Updated Apr 24, 2024
  • EvoNAPS Public

    EvoNAPS is a database providing input parameter settings for extensive sequence simulations to be used in phylogenetic studies.

    Python 1 3 0 0 Updated Mar 13, 2024
  • SANjar Public

    Simulates the deterministic and stochastic versions of the SAN model

    R 0 0 0 0 Updated Feb 9, 2024
  • Python 1 MIT 4 1 0 Updated Mar 28, 2023
  • ipoolseq-pipeline Public

    A pipeline for the analysis of iPool-Seq data

    Python 0 AGPL-3.0 1 0 0 Updated Feb 11, 2022
  • IQ-TREE Public archive

    Efficient phylogenomic software by maximum likelihood

    C++ 181 GPL-2.0 45 94 2 Updated Nov 4, 2021
  • trumicount Public

    Correctly counting molecules using unique molecular identifiers (UMIs)

    TeX 9 AGPL-3.0 1 2 0 Updated Sep 24, 2021
  • gwpcR Public

    Corrects UMI-based NGS data for phantom UMIs and lost molecules using a mechanistic model of UMI-based experiments

    R 3 AGPL-3.0 0 0 0 Updated Aug 23, 2021
  • py-remoter Public

    Task queue which keeps tracks of jobs and their exit status

    0 0 0 0 Updated Aug 13, 2021

Top languages

Loading…

Most used topics

Loading…