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v0.4.12

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@philres philres released this 17 Oct 13:32
· 138 commits to master since this release

*) Filter settings fixed for data sets with reads that don't have the
same length
*) BAM support improved
*) Better paired end support for BAM/SAM
*) Added parameters for read groups
*) Commandline output is now written to stderr
*) SAM/BAM output is written to stdou if -o/--output is omitted
*) Better handling of empty reads in FASTA/Q files
*) Change NAME filed to PN in SAM/BAM header
*) Fixed a bug that prevented NextGenMap from terminating when executed
in python scripts