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23 Open 412 Closed
23 Open 412 Closed
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Issues list

Total genome counter in log is off (warning message) error Help required for a GTDB-Tk error.
#585 opened Apr 26, 2024 by GabeAl
def TypedDict(typename, fields=_marker,/, *, total=True, closed=False, **kwargs): SyntaxError: invalid syntax error Help required for a GTDB-Tk error.
#583 opened Apr 23, 2024 by zhaoxuetong
classify_wf errors out when all inputs are unclassified next version Upcoming feature/fix in staging branch.
#576 opened Mar 15, 2024 by Zach-Sisson-1
Using gtdb_to_ncbi_majority_vote.py script to convert gtbd taxonomy to SILVA taxonomy
#575 opened Mar 13, 2024 by tarunaaggarwal
Attempting to add duplicate row error Help required for a GTDB-Tk error. next version Upcoming feature/fix in staging branch.
#573 opened Mar 8, 2024 by liu-congcong
4
Small (mock) reference data
#572 opened Mar 1, 2024 by bernt-matthias
3
Specify in documentation that the --genes parameter requires proteins as input. next version Upcoming feature/fix in staging branch.
#571 opened Feb 22, 2024 by LeeBergstrand
pydantic.dev/2.6/v/missing error Help required for a GTDB-Tk error.
#569 opened Feb 3, 2024 by WUD2018
5 tasks
1
relative evolutionary divergence (RED) values and median RED values
#568 opened Jan 25, 2024 by Julboteroc
2
How to get a tree containing all my MAGs
#567 opened Jan 12, 2024 by Sh1von
1
Error running Prodigal on genome error Help required for a GTDB-Tk error.
#566 opened Dec 20, 2023 by fhdbqr
2 tasks
4
Cannot open classify.tree file in Dendroscope error Help required for a GTDB-Tk error.
#563 opened Nov 28, 2023 by lewhiteside
1
Use type strains for GTDB to NCBI taxonomy translation
#552 opened Oct 16, 2023 by fplazaonate
2
[] are not present in the input list of genome to process error Help required for a GTDB-Tk error. next version Upcoming feature/fix in staging branch.
#549 opened Sep 21, 2023 by anatmaozcrispr
5 tasks
2
Problem with empty files (such as produced by metabat) error Help required for a GTDB-Tk error. next version Upcoming feature/fix in staging branch.
#540 opened Aug 2, 2023 by cmfield
1
Slow download speed v214
#522 opened Jun 2, 2023 by kafker
11
Use Pyrodigal as Prodigal alternative enhancement Proposed feature or change to GTDB-Tk.
#456 opened Dec 5, 2022 by lfenske-93
2
Write debug file on exception enhancement Proposed feature or change to GTDB-Tk.
#432 opened Sep 11, 2022 by aaronmussig
Subroutines for classify enhancement Proposed feature or change to GTDB-Tk.
#358 opened Nov 8, 2021 by SilasK
1
Unnecessary computation in de novo workflow enhancement Proposed feature or change to GTDB-Tk.
#243 opened Apr 20, 2020 by donovan-h-parks
Establish novelty of user genomes enhancement Proposed feature or change to GTDB-Tk.
#233 opened Mar 13, 2020 by donovan-h-parks
Add checkpointing enhancement Proposed feature or change to GTDB-Tk.
#207 opened Dec 12, 2019 by aaronmussig
Non-parametric bootstraps enhancement Proposed feature or change to GTDB-Tk.
#116 opened Apr 17, 2019 by donovan-h-parks
ProTip! What’s not been updated in a month: updated:<2024-04-01.