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refactor(round red value to 5 decimal after the coma): #466

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merged 1 commit into from Jan 12, 2023
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refactor(round red value to 5 decimal after the coma): #466

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6 changes: 5 additions & 1 deletion gtdbtk/files/classify_summary.py
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Expand Up @@ -124,11 +124,15 @@ def get_gid_taxonomy(self) -> Dict[str, List[str]]:
def write(self):
"""Writes the summary file to disk. None will be replaced with N/A"""
make_sure_path_exists(os.path.dirname(self.path))
print(self.path)
with open(self.path, 'w') as fh:
fh.write('\t'.join(self.get_col_order()[0]) + '\n')
for gid, row in sorted(self.rows.items()):
buf = list()
for data in self.get_col_order(row)[1]:
for idx,data in enumerate(self.get_col_order(row)[1]):
# for the red_value field, we want to round the data to 5 decimals after the comma if the value is not None
if idx==self.get_col_order()[0].index('red_value') and data is not None:
data = round(data,5)
buf.append(self.none_value if data is None else str(data))
fh.write('\t'.join(buf) + '\n')

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