PopPIPE v1.1.0

Use ska.rust instead of ska and add the transmission target

What's Changed

• Fix for when hashes in file name by @johannahelene in #9
• Adding transphylo, gubbins, bactdating by @johannahelene in #10
• Try to catch tiny alignments, output no further subclusters by @johnlees in #12
• Replace ska with ska.rust, add transmission pipeline by @johnlees in #16

New Contributors

• @johannahelene made their first contribution in #9

Full Changelog: v1.0.0...v1.1.0

v1.0.0: First pipeline

Use new microreact api, better tree handling with ete3

What's Changed

• Add helper script for assign runs by @johnlees in #3
• Upgrade to first release by @johnlees in #6
• Add version tags to docker image by @johnlees in #7

New Contributors

• @johnlees made their first contribution in #3

Full Changelog: https://github.com/bacpop/PopPIPE/commits/v1.0.0