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  1. bacpop/PopPUNK bacpop/PopPUNK Public

    PopPUNK ๐Ÿ‘จโ€๐ŸŽค (POPulation Partitioning Using Nucleotide Kmers)

    Python 91 18

  2. bacpop/pp-sketchlib bacpop/pp-sketchlib Public

    Library of sketching functions used by PopPUNK

    C++ 30 7

  3. bacpop/mandrake bacpop/mandrake Public

    Mandrake ๐ŸŒฟ/๐Ÿ‘จโ€๐Ÿ”ฌ๐Ÿฆ† โ€“ Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding

    Python 36 2

  4. bacpop/ska.rust bacpop/ska.rust Public

    Split k-mer analysis โ€“ version 2

    Rust 64 4

  5. mgalardini/pyseer mgalardini/pyseer Public

    SEER, reimplemented in python ๐Ÿ๐Ÿ”ฎ

    Python 110 27

  6. bacpop/unitig-caller bacpop/unitig-caller Public

    Methods to determine sequence element (unitig) presence/absence

    Python 18 3