Added a format definition for the output of the MoSS software

Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com>

src/main/org/openscience/cdk/io/formats/MoSSOutputFormat.java

@@ -0,0 +1,106 @@
+/* Copyright (C) 2010  Egon Willighagen <egonw@users.sf.net>
+ *
+ * Contact: cdk-devel@lists.sourceforge.net
+ *
+ * This program is free software; you can redistribute it and/or modify it under
+ * the terms of the GNU Lesser General Public License as published by the Free
+ * Software Foundation; either version 2.1 of the License, or (at your option)
+ * any later version. All we ask is that proper credit is given for our work,
+ * which includes - but is not limited to - adding the above copyright notice to
+ * the beginning of your source code files, and to any copyright notice that you
+ * may distribute with programs based on this work.
+ * 
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+ * FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
+ * details.
+ * 
+ * You should have received a copy of the GNU Lesser General Public License
+ * along with this program; if not, write to the Free Software Foundation, Inc.,
+ * 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA.
+ */
+package org.openscience.cdk.io.formats;
+
+import org.openscience.cdk.annotations.TestClass;
+import org.openscience.cdk.annotations.TestMethod;
+import org.openscience.cdk.tools.DataFeatures;
+
+/**
+ * @cdk.module ioformats
+ * @cdk.githash
+ * @cdk.set    io-formats
+ */
+@TestClass("org.openscience.cdk.io.formats.MoSSOutputFormatTest")
+public class MoSSOutputFormat implements IChemFormatMatcher {
+
+    private static IResourceFormat myself = null;
+
+    private MoSSOutputFormat() {}
+
+    /** {@inheritDoc} */
+    @TestMethod("testResourceFormatSet")
+    public static IResourceFormat getInstance() {
+        if (myself == null) myself = new MoSSOutputFormat();
+        return myself;
+    }
+
+    /** {@inheritDoc} */
+    @TestMethod("testGetFormatName")
+    public String getFormatName() {
+        return "MoSS Output Format";
+    }
+
+    /** {@inheritDoc} */
+    @TestMethod("testGetMIMEType")
+    public String getMIMEType() {
+        return "text/csv";
+    }
+
+    /** {@inheritDoc} */
+    @TestMethod("testGetPreferredNameExtension")
+    public String getPreferredNameExtension() {
+        return getNameExtensions()[0];
+    }
+
+    /** {@inheritDoc} */
+    @TestMethod("testGetNameExtensions")
+    public String[] getNameExtensions() {
+        return new String[]{"mossoutput"};
+    }
+
+    /** {@inheritDoc} */
+    @TestMethod("testGetReaderClassName")
+    public String getReaderClassName() { 
+        return null;
+    }
+
+    /** {@inheritDoc} */
+    @TestMethod("testGetWriterClassName")
+    public String getWriterClassName() { return null; }
+
+    /** {@inheritDoc} */
+    public boolean matches(int lineNumber, String line) {
+        if (lineNumber == 1 && line.equals("id,description,nodes,edges,s_abs,s_rel,c_abs,c_rel")) {
+            return true;
+        }
+        return false;
+    }
+
+    /** {@inheritDoc} */
+    @TestMethod("testIsXMLBased")
+    public boolean isXMLBased() {
+        return false;
+    }
+
+    /** {@inheritDoc} */
+    @TestMethod("testGetSupportedDataFeatures")
+    public int getSupportedDataFeatures() {
+        return DataFeatures.HAS_GRAPH_REPRESENTATION;
+    }
+
+    /** {@inheritDoc} */
+    @TestMethod("testGetRequiredDataFeatures")
+    public int getRequiredDataFeatures() {
+        return DataFeatures.HAS_GRAPH_REPRESENTATION;
+    }
+}

src/test/org/openscience/cdk/io/formats/MoSSOutputFormatTest.java

@@ -0,0 +1,33 @@
+/* Copyright (C) 2010  Egon Willighagen <egonw@users.sf.net>
+ *
+ * Contact: cdk-devel@slists.sourceforge.net
+ *
+ * This program is free software; you can redistribute it and/or modify it under
+ * the terms of the GNU Lesser General Public License as published by the Free
+ * Software Foundation; either version 2.1 of the License, or (at your option)
+ * any later version. All we ask is that proper credit is given for our work,
+ * which includes - but is not limited to - adding the above copyright notice to
+ * the beginning of your source code files, and to any copyright notice that you
+ * may distribute with programs based on this work.
+ * 
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+ * FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
+ * details.
+ * 
+ * You should have received a copy of the GNU Lesser General Public License
+ * along with this program; if not, write to the Free Software Foundation, Inc.,
+ * 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA.
+ */
+package org.openscience.cdk.io.formats;
+
+/**
+ * @cdk.module test-ioformats
+ */
+public class MoSSOutputFormatTest extends ChemFormatMatcherTest {
+
+    public MoSSOutputFormatTest() {
+        super.setChemFormatMatcher((IChemFormatMatcher)MoSSOutputFormat.getInstance());
+    }
+
+}

src/test/org/openscience/cdk/modulesuites/MioformatsTests.java

@@ -79,6 +79,7 @@
 import org.openscience.cdk.io.formats.MOPAC97FormatTest;
 import org.openscience.cdk.io.formats.MPQCFormatTest;
 import org.openscience.cdk.io.formats.MacroModelFormatTest;
+import org.openscience.cdk.io.formats.MoSSOutputFormatTest;
 import org.openscience.cdk.io.formats.Mol2FormatTest;
 import org.openscience.cdk.io.formats.NWChemFormatTest;
 import org.openscience.cdk.io.formats.PCModelFormatTest;
@@ -175,6 +176,7 @@
     MOPAC7FormatTest.class,
     MOPAC93FormatTest.class,
     MOPAC97FormatTest.class,
+    MoSSOutputFormatTest.class,
     MPQCFormatTest.class,
     NWChemFormatTest.class,
     PCModelFormatTest.class,