Factored out ARQ 2.6.8 as independent bundle (fixing strange classpat…

…h problems in the RDF plugin)

externals/com.hp.hpl.jena.arq/.classpath

@@ -0,0 +1,6 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+	<classpathentry exported="true" kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
+	<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
+	<classpathentry kind="src" path="src"/>
+</classpath>

externals/com.hp.hpl.jena.arq/.project

@@ -0,0 +1,28 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+	<name>com.hp.hpl.jena.arq</name>
+	<comment></comment>
+	<projects>
+	</projects>
+	<buildSpec>
+		<buildCommand>
+			<name>org.eclipse.jdt.core.javabuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.pde.ManifestBuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.pde.SchemaBuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+	</buildSpec>
+	<natures>
+		<nature>org.eclipse.pde.PluginNature</nature>
+		<nature>org.eclipse.jdt.core.javanature</nature>
+	</natures>
+</projectDescription>

externals/com.hp.hpl.jena.arq/META-INF/MANIFEST.MF

@@ -0,0 +1,73 @@
+Manifest-Version: 1.0
+Bundle-ManifestVersion: 2
+Bundle-Name: Jena
+Bundle-SymbolicName: com.hp.hpl.jena.arq;singleton:=true
+Bundle-Version: 2.8.2
+Require-Bundle: org.eclipse.core.runtime,
+ slf4j.api;bundle-version="1.5.0",
+ jcl104.over.slf4j;bundle-version="1.5.0",
+ org.apache.xerces;bundle-version="2.9.0",
+ com.hp.hpl.jena;bundle-version="2.6.2"
+Bundle-ClassPath: .,
+ jars/arq.jar
+Bundle-Activator: net.bioclipse.jena.arq.Activator
+Bundle-ActivationPolicy: lazy
+Bundle-Vendor: The Bioclipse Team
+Import-Package: org.apache.log4j
+Export-Package: arq,
+ arq.cmd,
+ arq.cmdline,
+ com.hp.hpl.jena.query,
+ com.hp.hpl.jena.query.larq,
+ com.hp.hpl.jena.sparql,
+ com.hp.hpl.jena.sparql.algebra,
+ com.hp.hpl.jena.sparql.algebra.op,
+ com.hp.hpl.jena.sparql.algebra.opt,
+ com.hp.hpl.jena.sparql.algebra.table,
+ com.hp.hpl.jena.sparql.core,
+ com.hp.hpl.jena.sparql.core.assembler,
+ com.hp.hpl.jena.sparql.core.describe,
+ com.hp.hpl.jena.sparql.engine,
+ com.hp.hpl.jena.sparql.engine.binding,
+ com.hp.hpl.jena.sparql.engine.http,
+ com.hp.hpl.jena.sparql.engine.iterator,
+ com.hp.hpl.jena.sparql.engine.main,
+ com.hp.hpl.jena.sparql.engine.main.iterator,
+ com.hp.hpl.jena.sparql.engine.optimizer,
+ com.hp.hpl.jena.sparql.engine.optimizer.reorder,
+ com.hp.hpl.jena.sparql.engine.ref,
+ com.hp.hpl.jena.sparql.expr,
+ com.hp.hpl.jena.sparql.expr.aggregate,
+ com.hp.hpl.jena.sparql.expr.nodevalue,
+ com.hp.hpl.jena.sparql.function,
+ com.hp.hpl.jena.sparql.function.library,
+ com.hp.hpl.jena.sparql.lang,
+ com.hp.hpl.jena.sparql.lang.arq,
+ com.hp.hpl.jena.sparql.lang.rdql,
+ com.hp.hpl.jena.sparql.lang.sparql_10,
+ com.hp.hpl.jena.sparql.lang.sparql_11,
+ com.hp.hpl.jena.sparql.lib,
+ com.hp.hpl.jena.sparql.lib.cache,
+ com.hp.hpl.jena.sparql.lib.iterator,
+ com.hp.hpl.jena.sparql.lib.org.json,
+ com.hp.hpl.jena.sparql.mgt,
+ com.hp.hpl.jena.sparql.modify,
+ com.hp.hpl.jena.sparql.modify.op,
+ com.hp.hpl.jena.sparql.path,
+ com.hp.hpl.jena.sparql.pfunction,
+ com.hp.hpl.jena.sparql.pfunction.library,
+ com.hp.hpl.jena.sparql.procedure,
+ com.hp.hpl.jena.sparql.procedure.library,
+ com.hp.hpl.jena.sparql.resultset,
+ com.hp.hpl.jena.sparql.serializer,
+ com.hp.hpl.jena.sparql.sse,
+ com.hp.hpl.jena.sparql.sse.builders,
+ com.hp.hpl.jena.sparql.sse.lang,
+ com.hp.hpl.jena.sparql.sse.lang.parser,
+ com.hp.hpl.jena.sparql.sse.writers,
+ com.hp.hpl.jena.sparql.syntax,
+ com.hp.hpl.jena.sparql.util,
+ com.hp.hpl.jena.sparql.util.graph,
+ com.hp.hpl.jena.sparql.vocabulary,
+ com.hp.hpl.jena.update,
+ net.bioclipse.jena.arq

externals/com.hp.hpl.jena.arq/build.properties

@@ -0,0 +1,5 @@
+bin.includes = plugin.xml,\
+               META-INF/,\
+               .
+bin.. = bin/
+source.. = src/

externals/com.hp.hpl.jena.arq/plugin.xml

@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<?eclipse version="3.0"?>
+<plugin>
+
+</plugin>

externals/com.hp.hpl.jena.arq/src/META-INF/MANIFEST.MF

@@ -0,0 +1,4 @@
+Manifest-Version: 1.0
+Archiver-Version: Plexus Archiver
+Created-By: 14.1-b02 (Sun Microsystems Inc.)
+

externals/com.hp.hpl.jena.arq/src/arq/arq.java

@@ -0,0 +1,53 @@
+/*
+ * (c) Copyright 2004, 2005, 2006, 2007, 2008, 2009 Hewlett-Packard Development Company, LP
+ * [See end of file]
+ */
+
+
+package arq;
+
+import java.util.* ;
+
+/** A program to execute queries from the command line in ARQ mode.
+  *
+ * @author  Andy Seaborne
+ */
+
+public class arq
+{
+    public static void main(String... argv)
+    {
+        List<String> a = new ArrayList<String>() ;
+        for ( int i = 0 ; i < argv.length ; i++ ) a.add(argv[i]) ;
+        a.add(0, "--syntax=arq") ;
+        argv = a.toArray(argv) ;
+        query.main(argv) ;
+    }
+ }
+
+/*
+ *  (c) Copyright 2004, 2005, 2006, 2007, 2008, 2009 Hewlett-Packard Development Company, LP
+ *  All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions
+ * are met:
+ * 1. Redistributions of source code must retain the above copyright
+ *    notice, this list of conditions and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above copyright
+ *    notice, this list of conditions and the following disclaimer in the
+ *    documentation and/or other materials provided with the distribution.
+ * 3. The name of the author may not be used to endorse or promote products
+ *    derived from this software without specific prior written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR
+ * IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
+ * IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT,
+ * INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
+ * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+ * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+ * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
+ * THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ */

externals/com.hp.hpl.jena.arq/src/arq/cmd/CmdException.java

@@ -0,0 +1,46 @@
+/*
+ * (c) Copyright 2006, 2007, 2008, 2009 Hewlett-Packard Development Company, LP
+ * All rights reserved.
+ * [See end of file]
+ */
+
+package arq.cmd;
+
+/**
+ * Indicate that something went wrong - while executing the command or processing the request.
+ * @author Andy Seaborne
+ */
+
+public class CmdException extends RuntimeException
+{
+    public CmdException()                             { super() ; }
+    public CmdException(String msg)                   { super(msg) ; }
+    public CmdException(String msg, Throwable cause)  { super(msg, cause) ; }
+}
+
+/*
+ * (c) Copyright 2006, 2007, 2008, 2009 Hewlett-Packard Development Company, LP
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions
+ * are met:
+ * 1. Redistributions of source code must retain the above copyright
+ *    notice, this list of conditions and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above copyright
+ *    notice, this list of conditions and the following disclaimer in the
+ *    documentation and/or other materials provided with the distribution.
+ * 3. The name of the author may not be used to endorse or promote products
+ *    derived from this software without specific prior written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR
+ * IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
+ * IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT,
+ * INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
+ * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+ * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+ * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
+ * THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ */

externals/com.hp.hpl.jena.arq/src/arq/cmd/CmdUtils.java

@@ -0,0 +1,52 @@
+/*
+ * (c) Copyright 2004, 2005, 2006, 2007, 2008, 2009 Hewlett-Packard Development Company, LP
+ * All rights reserved.
+ * [See end of file]
+ */
+
+package arq.cmd;
+
+
+/** Odds and ends
+ * 
+ * @author Andy Seaborne
+ */
+
+public class CmdUtils
+{
+    public static void setN3Params()
+    {
+        // Tune N3 output for result set output.
+        System.setProperty("usePropertySymbols",   "false") ;
+        System.setProperty("objectLists" ,         "false") ;
+        System.setProperty("minGap",               "2") ;
+        System.setProperty("propertyColumn",       "14") ;
+    }
+}
+
+/*
+ * (c) Copyright 2004, 2005, 2006, 2007, 2008, 2009 Hewlett-Packard Development Company, LP
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions
+ * are met:
+ * 1. Redistributions of source code must retain the above copyright
+ *    notice, this list of conditions and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above copyright
+ *    notice, this list of conditions and the following disclaimer in the
+ *    documentation and/or other materials provided with the distribution.
+ * 3. The name of the author may not be used to endorse or promote products
+ *    derived from this software without specific prior written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR
+ * IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
+ * IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT,
+ * INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
+ * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+ * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+ * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
+ * THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ */

externals/com.hp.hpl.jena.arq/src/arq/cmd/TerminationException.java

@@ -0,0 +1,47 @@
+/*
+ * (c) Copyright 2006, 2007, 2008, 2009 Hewlett-Packard Development Company, LP
+ * All rights reserved.
+ * [See end of file]
+ */
+
+package arq.cmd;
+
+/** Exception used to indicate that the command should end now.
+ *  Use instead of System.exit so that a wrapper can catch (else a command server
+ *  wil exit wrongly). 
+ * @author Andy Seaborne
+ */
+
+public class TerminationException extends CmdException
+{
+    public int returnCode ;
+    public TerminationException(int rc) { super() ; this.returnCode = rc ; }
+    public int getCode() { return returnCode ; }
+}
+
+/*
+ * (c) Copyright 2006, 2007, 2008, 2009 Hewlett-Packard Development Company, LP
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions
+ * are met:
+ * 1. Redistributions of source code must retain the above copyright
+ *    notice, this list of conditions and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above copyright
+ *    notice, this list of conditions and the following disclaimer in the
+ *    documentation and/or other materials provided with the distribution.
+ * 3. The name of the author may not be used to endorse or promote products
+ *    derived from this software without specific prior written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR
+ * IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
+ * IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT,
+ * INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
+ * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+ * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+ * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
+ * THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ */