Fix `exon` redux for 2 field alleles

To correctly reduce to the exon version, it first expands to W and then reduce to exon level producing all possibilities at exon level.

Fixes #320

What's Changed

• Bump gunicorn from 20.1.0 to 22.0.0 by @dependabot in #319
• Fix exon reductions for 2 field alleles by @pbashyal-nmdp in #322

Full Changelog: 1.1.2...1.1.3

ARD default redux + Bug Fixes

Feature:

• ARD reduction (lgx) is the default for ard.redux()

Bug Fixes:

• When looking up MAC codes for allele list, look up with smart sort
• Batch processing failed for zip and no compression

Serology Updates

Serolgy Updates

Note: This release changes and updates Serology related data. Please rebuild the cache database if there's a missing Serology error.

pyard-import --re-install

• Support Associated Antigens in addition to broad/splits #303
• Fix Serology reduction for 2 field alleles
• All recognized serology to be valid, not only the ones that have corresponding DNA Alleles #306
• Fix batch processing for DRBX column
• Map Serology to the correct XX version

Fix CWD and Serology reduction issues

• CWD reduction issues for XX alleles
• Allow S reduction mode for REST endpoint

See #301 For details.

1.0.10

What's Changed

• Fix serology sort by @pbashyal-nmdp in #297

Full Changelog: 1.0.9...1.0.10

1.0.9 Updated CWD2 Reference Data

• Updated CWD2 Reference Data from igdawg
• cwd_redux() can handle CWD2 allele that are Nulls

1.0.8 - `/similar` endpoint and validation fix

• #286 similar endpoint return all alleles/MAC with given prefixes
• #287 Allele validation in non-strict mode

Find Similar Alleles

Features:

• Find similar Alleles options with pyard command #264

Bug Fixes:

• V2 formats that are not valid #283
• MICA, MICB, HFE alleles that show up as V2 formats #280

1.0.6 Validation of allele specific MAC codes

• Use allele specific antigen code rules when validating MACs that cross antigen group similar to MAC Service
• Returns the original InvalidAlleleError instead of wrapping it in InvalidTypingError when an allele is not valid.

1.0.5 Non strict mode

Supports non-strict mode makes valid alleles by adding expression characters to invalid alleles.

Use non strict mode in config to reduce alleles that may be valid with expression characters.

>>> my_configs = {'strict': False, 'verbose_log': True}
>>> import pyard
>>> ard = pyard.init(config=my_configs, load_mac=False)

>>> ard.redux('A*24:329', 'lgx')
A*24:329 is not valid. Using A*24:329Q
'A*24:329Q'

>>> ard.redux('DQB1*03:276', 'lgx')
DQB1*03:276 is not valid. Using DQB1*03:276N
'DQB1*03:01'

Add non-strict and verbose modes to pyard CLI.

❯ pyard --gl "DQB1*03:276" -r lgx
Typing Error: DQB1*03:276 is not valid GL String.
 DQB1*03:276 is not a valid Allele

❯ pyard --non-strict --gl "DQB1*03:276" -r lgx
DQB1*03:01

❯ pyard --non-strict --verbose --gl "DQB1*03:276" -r lgx
DQB1*03:276 is not valid. Using DQB1*03:276N
DQB1*03:01