Crosstalk between codon optimality and 3' UTR cis-elements dictates mRNA stability

Deep learning the cis-regulatory code for gene expression in selected model plants

This repository contains custom code used for analysis in El Ghamrasni et al.,

Docker container for combining UniverSC and SCAFE for 5' RNA-Seq data

This project contains code used in my work on predicting gene expression from cis-regulatory sequences

Workflow to identify functional cis-regulatory regions for each annotated cell type