This repo provides an exhaustive pipeline of processing TCGA whole-slide images for downstream multiple instance learning.
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Updated
Jun 12, 2024 - Python
This repo provides an exhaustive pipeline of processing TCGA whole-slide images for downstream multiple instance learning.
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
Bioconductor package for management of multi-assay data
Functions and data relevant to the tutorials published on the WeChat official account MedBioInfoCloud are encapsulated in this R package.
WebGen Vertically Integrated Project
Contains code related to my multi-omics integration project at WEHI.
Provide R access to the NCI Genomic Data Commons portal.
Scripts to manage biotab files from TCGA.
Toolbox package for organizing and working with TCGA data
This is a repository to show my experience analyzing different kinds of Omics data.
TCGAbiolinks
A unified downloader+preprocessor for cancer genomics datasets
The Cancer Genome Atlas (TCGA), a cancer genomics reference program, has molecularly characterized more than 20,000 primary cancer samples and paired normal samples covering 33 types of cancer. This joint effort between the NCI and the National Human Genome Research Institute began in 2006.
PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
Database connector for the bioinfoDB.hg38 database
Simulation of interactions miRNA:Competing Targets
Interactive R package to quantify, analyse and visualise alternative splicing
📦 An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/
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