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Nextstrain

Real-time tracking of pathogen evolution

187 followers
https://nextstrain.org
@nextstrain
@nextstrain@mstdn.science

Overview
Repositories 95
Projects
Packages
People 8

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Overview
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ncov Public

Nextstrain build for SARS-CoV-2

Python 1.4k 405
augur Public

Pipeline components for real-time phylodynamic analysis

Python 270 132
auspice Public

Web app for visualizing pathogen evolution

JavaScript 300 168

Repositories

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Showing 10 of 95 repositories

nextclade Public
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

Rust 233 MIT 62 110 (33 issues need help) 20 Updated Jun 4, 2025
nextclade_data Public
Datasets for https://github.com/nextstrain/nextclade

Python 35 29 9 16 Updated Jun 4, 2025
auspice Public
Web app for visualizing pathogen evolution

JavaScript 300 AGPL-3.0 168 244 (4 issues need help) 35 Updated Jun 4, 2025
forecasts-ncov Public
SARS-CoV-2 variant growth rates and frequency forecasts

Python 7 2 12 5 Updated Jun 3, 2025
nextstrain.org Public
The Nextstrain website

JavaScript 96 AGPL-3.0 50 72 14 Updated Jun 3, 2025
lassa Public
Nextstrain build for Lassa virus

Python 0 5 7 3 Updated Jun 3, 2025
augur Public
Pipeline components for real-time phylodynamic analysis

Python 270 AGPL-3.0 132 218 (1 issue needs help) 34 Updated Jun 3, 2025
.github Public

Shell 8 11 8 2 Updated Jun 3, 2025
auspice.us Public

JavaScript 13 8 4 1 Updated Jun 3, 2025
zika Public
Nextstrain build for Zika virus

Python 9 11 4 2 Updated Jun 3, 2025

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