Support UniProt accessions with "submittedName"

3D-Beacons · Apr 17, 2023 · 0677911 · 0677911
1 parent 2bad139
commit 0677911
Showing 1 changed file with 10 additions and 4 deletions.
diff --git a/bio3dbeacons/cli/ciftojson/ciftojson.py b/bio3dbeacons/cli/ciftojson/ciftojson.py
@@ -71,10 +71,16 @@ def add_extra_uniprot_info(self):
             namespace = "{http://uniprot.org/uniprot}"
             # fetch accession related data
             ac_id = xml_root.find(f"./{namespace}entry/{namespace}name").text
-            description = xml_root.find(
-                f"./{namespace}entry/{namespace}protein/{namespace}recommendedName"
-                f"/{namespace}fullName"
-            ).text
+            try:
+                description = xml_root.find(
+                    f"./{namespace}entry/{namespace}protein/{namespace}recommendedName"
+                    f"/{namespace}fullName"
+                ).text
+            except:
+                description = xml_root.find(
+                    f"./{namespace}entry/{namespace}protein/{namespace}submittedName"
+                    f"/{namespace}fullName"
+                ).text
 
             # fetch gene related data
             gene = xml_root.find(