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Slicer Linux dashboard issues #16

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fedorov opened this issue Apr 29, 2017 · 6 comments
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Slicer Linux dashboard issues #16

fedorov opened this issue Apr 29, 2017 · 6 comments
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@fedorov
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fedorov commented Apr 29, 2017 •
edited by jcfr
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Build on Win fails, but as discussed that is expected.. See #20

Linux: cmake issues http://slicer.cdash.org/viewBuildError.php?buildid=1014261

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fedorov added a commit that referenced this issue Apr 29, 2017
@fedorov
BUG: initialize logger
397c0e6 
Aiming to resolve mac test failure (re #16)
@jcfr jcfr changed the title Slicer dashboard issues Slicer Windows and Linux dashboard issues May 3, 2017
@jcfr jcfr changed the title Slicer Windows and Linux dashboard issues Slicer Linux dashboard issues May 25, 2017
@jcfr jcfr added the bug label May 25, 2017
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jcfr commented May 30, 2017

The Linux issue persist. See http://slicer.cdash.org/viewBuildError.php?buildid=1033658

I wasn't able to reproduce it locally .. I will debug on the factory later this week

@fedorov fedorov mentioned this issue Aug 16, 2017
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fedorov commented Aug 16, 2017

Different issue now: http://slicer.cdash.org/viewBuildError.php?buildid=1080469

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jcfr commented Sep 6, 2017

The linux error occurs because on the factory, the script /usr/bin/lsb_release (used by pip) is written in python and despite of having #!/usr/bin/python at the top, the python library and environment that are used are the one of Slicer which is missing the package lsb_release ...

@jcfr jcfr mentioned this issue Sep 6, 2017
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jcfr commented Sep 9, 2017

I will integrate and finalize the fix when I am back from vacation on the week of sept 19th.

@jcfr jcfr mentioned this issue Sep 22, 2017
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slicerbot pushed a commit to Slicer/SlicerGitSVNArchive that referenced this issue Sep 29, 2017
@jcfr
COMP: Fix installation of python package on older linux distribution
d1fd596 
For example, errors occurred on the factory because the script
/usr/bin/lsb_release (used by pip) is written in python and
despite of having #!/usr/bin/python at the top, the python library
and environment that are used are the one of Slicer which is missing
the package lsb_release

See AIM-Harvard/SlicerRadiomics#16 (comment)

git-svn-id: http://svn.slicer.org/Slicer4/trunk@26402 3bd1e089-480b-0410-8dfb-8563597acbee
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An alternative fix would be to edit lsb_release first line on the factory system and add -Es. That's what is done to avoid this issue in newer lsb/ubuntu releases:

https://bugs.launchpad.net/ubuntu/+source/lsb/+bug/938869/comments/28

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jcfr commented Sep 29, 2017

@ihnorton Thanks for the suggestion, when all distributions we build one will have implemented the use of -Es , we will remove the use of the lsb_release wrapper from Slicer.

In the mean time, I am closing this issue as I confirm build of extension complete on the Linux factory.

@jcfr jcfr closed this as completed Sep 29, 2017
@jcfr jcfr mentioned this issue Sep 29, 2017
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jcfr added a commit to jcfr/SlicerGitSVNArchive that referenced this issue Oct 3, 2017
@jcfr
COMP: Fix installation of python package on older linux distribution
f6562a7 
For example, errors occurred on the factory because the script
/usr/bin/lsb_release (used by pip) is written in python and
despite of having #!/usr/bin/python at the top, the python library
and environment that are used are the one of Slicer which is missing
the package lsb_release

See AIM-Harvard/SlicerRadiomics#16 (comment)

git-svn-id: http://svn.slicer.org/Slicer4/trunk@26402 3bd1e089-480b-0410-8dfb-8563597acbee
dzenanz pushed a commit to dzenanz/SlicerGitSVNArchive that referenced this issue Oct 3, 2017
@jcfr @dzenanz
COMP: Fix installation of python package on older linux distribution
d6fbc59 
For example, errors occurred on the factory because the script
/usr/bin/lsb_release (used by pip) is written in python and
despite of having #!/usr/bin/python at the top, the python library
and environment that are used are the one of Slicer which is missing
the package lsb_release

See AIM-Harvard/SlicerRadiomics#16 (comment)

git-svn-id: http://svn.slicer.org/Slicer4/trunk@26402 3bd1e089-480b-0410-8dfb-8563597acbee
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