Installation fails in WSL environment

[jhuguetn]

Unsuccessful attempt to install this package on a WSL2 Ubuntu system as a (AmyPET) dependency. Some required libraries are missing, perhaps?

System details:

(amypet_dev) user@host:/.../AmyPET$ uname -r
5.10.60.1-microsoft-standard-WSL2
(amypet_dev) user@host:/.../AmyPET$ python -V
Python 3.7.13
(amypet_dev) user@host:/.../AmyPET$ pip -V
pip 22.0.4 from /home/user/venvs/amypet_dev/lib/python3.7/site-packages/pip (python 3.7)

pip error trace:

(amypet_dev) user@host:/.../AmyPET$ pip install cuvec
Collecting cuvec
  Using cached cuvec-2.11.1.tar.gz (37 kB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Preparing metadata (pyproject.toml) ... done
Building wheels for collected packages: cuvec
  Building wheel for cuvec (pyproject.toml) ... error
  error: subprocess-exited-with-error

  × Building wheel for cuvec (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [83 lines of output]
      WARNING:cuvec.setup:Import or CUDA device detection error:
      NVML Shared Library Not Found
      Not searching for unused variables given on the command line.
      -- The C compiler identification is GNU 7.5.0
      -- Detecting C compiler ABI info
      -- Detecting C compiler ABI info - done
      -- Check for working C compiler: /usr/bin/cc - skipped
      -- Detecting C compile features
      -- Detecting C compile features - done
      -- The CXX compiler identification is GNU 7.5.0
      -- Detecting CXX compiler ABI info
      -- Detecting CXX compiler ABI info - done
      -- Check for working CXX compiler: /usr/bin/c++ - skipped
      -- Detecting CXX compile features
      -- Detecting CXX compile features - done
      -- Configuring done
      -- Generating done
      -- Build files have been written to: /tmp/pip-install-ty00gks4/cuvec_d337dca4039c4731a10fcf56a873fa80/_cmake_test_compile/build
      -- The C compiler identification is GNU 7.5.0
      -- The CXX compiler identification is GNU 7.5.0
      -- Detecting C compiler ABI info
      -- Detecting C compiler ABI info - done
      -- Check for working C compiler: /usr/bin/cc - skipped
      -- Detecting C compile features
      -- Detecting C compile features - done
      -- Detecting CXX compiler ABI info
      -- Detecting CXX compiler ABI info - done
      -- Check for working CXX compiler: /usr/bin/c++ - skipped
      -- Detecting CXX compile features
      -- Detecting CXX compile features - done
      CMake Error at /tmp/pip-build-env-4csnmbpo/overlay/lib/python3.7/site-packages/cmake/data/share/cmake-3.22/Modules/FindPackageHandleStandardArgs.cmake:230 (message):
        Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES
        Development Development.Module Development.Embed) (found version "3.7.13")
      Call Stack (most recent call first):
        /tmp/pip-build-env-4csnmbpo/overlay/lib/python3.7/site-packages/cmake/data/share/cmake-3.22/Modules/FindPackageHandleStandardArgs.cmake:594 (_FPHSA_FAILURE_MESSAGE)
        /tmp/pip-build-env-4csnmbpo/overlay/lib/python3.7/site-packages/cmake/data/share/cmake-3.22/Modules/FindPython/Support.cmake:3166 (find_package_handle_standard_args)
        /tmp/pip-build-env-4csnmbpo/overlay/lib/python3.7/site-packages/cmake/data/share/cmake-3.22/Modules/FindPython3.cmake:490 (include)
        CMakeLists.txt:12 (find_package)
...
  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for cuvec
Failed to build cuvec
ERROR: Could not build wheels for cuvec, which is required to install pyproject.toml-based projects

[jhuguetn]

Update: The CMake error message below gave me a hint, I've tried installing python3-dev system package and now building process worked fine.

Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES
Development Development.Module Development.Embed) (found version "3.7.13")

If python-dev is a requirement I would suggest stating it in the README file.

[casperdcl]

Yes either installing via conda (which includes development libraries by default) or apt-get install python3-dev (and a working compiler) are required indeed.