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general questions about how to build a template

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stnava edited this page Jan 2, 2017 · 1 revision

https://github.com/stnava/ANTsR/wiki/general-questions-about-how-to-build-a-template

Toggle table of contents Pages 32

Home
Anatomy of an antsRegistration call
ANTS and antsRegistration
ANTs version information
antsCorticalThickness and antsLongitudinalCorticalThickness output
antsRegistration metric sampling strategies
antsRegistration reproducibility issues
Command line parsing issues
Compiling ANTs on Linux and Mac OS
Compiling ANTs on Windows 10
Deprecated or legacy ANTs programs
Dimensionality or ImageDimension option in ANTs
Forward and inverse warps for warping images, pointsets and Jacobians
general questions about how to build a template
Generating a new release
How does ANTs handle qform and sform in NIFTI 1 images?
image vs point transformation, gradient step size and the jacobian
Importing diffusion tensor data from other software
Inputs do not occupy the same physical space
Install ANTs on Amazon
Installing ANTs release binaries
ITK affine transform conversion
My registration fails with an error
N4BiasFieldCorrection
Output images have incorrect headers or otherwise do not match the applied transform
Reconstruct DTI from DWI using mrtrix
simple case: T1 to MNI mapping for both structure and pre registered fMRI
SPM and ANTs compatibility
Tips for improving registration results
Using ITK SNAP with ANTs
Warp and reorient a diffusion tensor image
What is the effective scale of the SyN transformation?

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