Iterseg segment_data saves as ome-zarr directly during segmentation #14
Workflow file for this run
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name: Test and Deploy | |
# This workflow: | |
# - runs tests on pull requests | |
# - runs tests on pushing to main | |
# - if it's a tag push and the tag starts with v, and if the tests pass, | |
# deploys to PyPI using Trusted Publishers: | |
# https://docs.pypi.org/trusted-publishers/ | |
# on: controls when the workflow will run | |
on: | |
# Triggers the workflow on push or pull request events but only for the main | |
# branch or for tags starting with v | |
push: | |
branches: [ main ] | |
tags: [ 'v*' ] | |
pull_request: | |
branches: [ main ] | |
# Allows you to run this workflow manually from the Actions tab | |
workflow_dispatch: | |
jobs: | |
test: | |
name: ${{ matrix.platform }} py${{ matrix.python-version }} | |
runs-on: ${{ matrix.platform }} | |
strategy: | |
matrix: | |
platform: [ubuntu-latest, windows-latest, macos-latest] | |
python-version: ['3.9', '3.10'] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
# these libraries enable testing on Qt on linux | |
- uses: tlambert03/setup-qt-libs@v1 | |
# strategy borrowed from vispy for installing opengl libs on windows | |
- name: Install Windows OpenGL | |
if: runner.os == 'Windows' | |
run: | | |
git clone --depth 1 https://github.com/pyvista/gl-ci-helpers.git | |
powershell gl-ci-helpers/appveyor/install_opengl.ps1 | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install setuptools tox tox-gh-actions | |
python -m pip install .[testing] | |
# this runs the platform-specific tests declared in tox.ini | |
- name: Test with tox | |
uses: aganders3/headless-gui@v1 | |
with: | |
run: python -m tox | |
env: | |
PLATFORM: ${{ matrix.platform }} | |
- name: Coverage | |
uses: codecov/codecov-action@v3 | |
deploy: | |
needs: [test] | |
runs-on: ubuntu-latest | |
if: contains(github.ref, 'tags') | |
permissions: | |
id-token: write | |
contents: write | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: "3.x" | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install . | |
- name: Build | |
run: | | |
git tag | |
python -m build | |
- name: Publish to PyPI | |
uses: pypa/gh-action-pypi-publish@release/v1 | |
- name: Publish to GitHub | |
uses: softprops/action-gh-release@v1 | |
with: | |
tag_name: ${{ github.ref }} | |
name: ${{ env.tag }} | |
# body: add when we add release notes | |
draft: false | |
prerelease: ${{ contains(github.ref, 'rc') }} | |
files: | | |
dist/* |