Common settings for fastmath, sharrow_skip, and other compute controls across components #685
Workflow file for this run
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name: Core Testing | |
on: | |
push: | |
branches: | |
- '*' | |
pull_request: | |
branches: | |
- '*' | |
env: | |
CACHE_NUMBER: 0 # increase to reset cache manually | |
jobs: | |
foundation: | |
strategy: | |
matrix: | |
python-version: ["3.10"] | |
defaults: | |
run: | |
shell: bash -l {0} | |
name: linux-64-py${{ matrix.python-version }} | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Setup Mambaforge | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
miniforge-variant: Mambaforge | |
miniforge-version: latest | |
activate-environment: asim-test | |
use-mamba: true | |
python-version: ${{ matrix.python-version }} | |
- name: Set cache date for year and month | |
run: echo "DATE=$(date +'%Y%m')" >> $GITHUB_ENV | |
- uses: actions/cache@v3 | |
with: | |
path: /usr/share/miniconda3/envs/asim-test | |
key: linux-64-conda-${{ hashFiles('conda-environments/github-actions-tests.yml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }} | |
id: cache | |
- name: Update environment | |
run: | | |
mamba env update -n asim-test -f conda-environments/github-actions-tests.yml | |
mamba install --yes \ | |
"psutil=5.9.5" \ | |
"pydantic=2.6.1" \ | |
"pypyr=5.8.0" \ | |
"pytables=3.6.1" \ | |
"pytest-cov" \ | |
"pytest-regressions=2.5.0" \ | |
"scikit-learn=1.2.2" \ | |
"sharrow>=2.6.0" \ | |
"simwrapper=1.8.5" \ | |
"xarray=2023.2.0" \ | |
"zarr=2.14.2" \ | |
"zstandard=0.21.0" | |
if: steps.cache.outputs.cache-hit != 'true' | |
- name: Install activitysim | |
# installing without dependencies is faster, we trust that all needed dependencies | |
# are in the conda environment defined above. Also, this avoids pip getting | |
# confused and reinstalling tables (pytables). | |
run: | | |
python -m pip install -e . --no-deps | |
- name: Conda checkup | |
run: | | |
mamba info -a | |
mamba list | |
- name: Lint with Black | |
run: | | |
# stop the build if there are problems | |
black --check --diff . | |
- name: Test activitysim.core | |
run: | | |
python -m pytest --pyargs activitysim.core | |
- name: Test activitysim.abm.models | |
run: | | |
python -m pytest --pyargs activitysim.abm.models | |
- name: Test activitysim.abm.test | |
run: | | |
python -m pytest --pyargs activitysim.abm.test | |
- name: Test activitysim.cli | |
run: | | |
python -m pytest --pyargs activitysim.cli | |
- name: Test activitysim.examples.test | |
run: | | |
python -m pytest --pyargs activitysim.examples.test | |
cross-platform: | |
# also test foundation cross platforms, but do not require a successful | |
# completion before starting regional model tests | |
needs: foundation | |
strategy: | |
matrix: | |
include: | |
- os: macos-latest | |
label: macOS | |
prefix: /Users/runner/miniconda3/envs/asim-test | |
python-version: "3.10" | |
- os: windows-latest | |
label: win-64 | |
prefix: C:\Miniconda3\envs\asim-test | |
python-version: "3.10" | |
defaults: | |
run: | |
shell: bash -l {0} | |
name: ${{ matrix.label }} | |
runs-on: ${{ matrix.os }} | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Setup Mambaforge | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
miniforge-variant: Mambaforge | |
miniforge-version: latest | |
activate-environment: asim-test | |
use-mamba: true | |
python-version: ${{ matrix.python-version }} | |
- name: Set cache date for year and month | |
run: echo "DATE=$(date +'%Y%m')" >> $GITHUB_ENV | |
- uses: actions/cache@v3 | |
with: | |
path: ${{ matrix.prefix }} | |
key: ${{ matrix.label }}-conda-${{ hashFiles('conda-environments/github-actions-tests.yml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }} | |
id: cache | |
- name: Update environment | |
run: | | |
mamba env update -n asim-test -f conda-environments/github-actions-tests.yml | |
mamba install --yes \ | |
"psutil=5.9.5" \ | |
"pydantic=2.6.1" \ | |
"pypyr=5.8.0" \ | |
"pytables=3.6.1" \ | |
"pytest-cov" \ | |
"pytest-regressions=2.5.0" \ | |
"scikit-learn=1.2.2" \ | |
"sharrow>=2.6.0" \ | |
"simwrapper=1.8.5" \ | |
"xarray=2023.2.0" \ | |
"zarr=2.14.2" \ | |
"zstandard=0.21.0" | |
if: steps.cache.outputs.cache-hit != 'true' | |
- name: Install activitysim | |
# installing without dependencies is faster, we trust that all needed dependencies | |
# are in the conda environment defined above. Also, this avoids pip getting | |
# confused and reinstalling tables (pytables). | |
run: | | |
python -m pip install -e . --no-deps | |
- name: Conda checkup | |
run: | | |
mamba info -a | |
mamba list | |
- name: Lint with Black | |
run: | | |
# stop the build if there are problems | |
black --check --diff . | |
- name: Test activitysim.core | |
run: | | |
python -m pytest --pyargs activitysim.core | |
- name: Test activitysim.abm.models | |
run: | | |
python -m pytest --pyargs activitysim.abm.models | |
- name: Test activitysim.abm.test | |
run: | | |
python -m pytest --pyargs activitysim.abm.test | |
- name: Test activitysim.cli | |
run: | | |
python -m pytest --pyargs activitysim.cli | |
builtin_regional_models: | |
needs: foundation | |
env: | |
mamba-env-prefix: /usr/share/miniconda3/envs/asim-test | |
python-version: "3.10" | |
label: linux-64 | |
strategy: | |
matrix: | |
region: | |
- prototype_mtc | |
- prototype_arc | |
- placeholder_psrc | |
- prototype_marin | |
- prototype_mtc_extended | |
- placeholder_sandag | |
- prototype_sandag_xborder | |
- production_semcog | |
- prototype_mwcog | |
- placeholder_multiple_zone | |
fail-fast: false | |
defaults: | |
run: | |
shell: bash -l {0} | |
name: ${{ matrix.region }} | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Setup Mambaforge | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
miniforge-variant: Mambaforge | |
miniforge-version: latest | |
activate-environment: asim-test | |
use-mamba: true | |
python-version: ${{ env.python-version }} | |
- name: Set cache date for year and month | |
run: echo "DATE=$(date +'%Y%m')" >> $GITHUB_ENV | |
- uses: actions/cache@v3 | |
with: | |
path: ${{ env.mamba-env-prefix }} | |
key: ${{ env.label }}-conda-${{ hashFiles('conda-environments/github-actions-tests.yml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }} | |
id: cache | |
- name: Update environment | |
run: | | |
mamba env update -n asim-test -f conda-environments/github-actions-tests.yml | |
mamba install --yes \ | |
"psutil=5.9.5" \ | |
"pydantic=2.6.1" \ | |
"pypyr=5.8.0" \ | |
"pytables=3.6.1" \ | |
"pytest-cov" \ | |
"pytest-regressions=2.5.0" \ | |
"scikit-learn=1.2.2" \ | |
"sharrow>=2.6.0" \ | |
"simwrapper=1.8.5" \ | |
"xarray=2023.2.0" \ | |
"zarr=2.14.2" \ | |
"zstandard=0.21.0" | |
if: steps.cache.outputs.cache-hit != 'true' | |
- name: Install activitysim | |
# installing without dependencies is faster, we trust that all needed dependencies | |
# are in the conda environment defined above. Also, this avoids pip getting | |
# confused and reinstalling tables (pytables). | |
run: | | |
python -m pip install -e . --no-deps | |
- name: Conda checkup | |
run: | | |
mamba info -a | |
mamba list | |
# TODO: Cache sharrow compiled flows? The contents of __pycache__ appear to | |
# be ignored, so this is not working as expected right now | |
# | |
# - name: Define Inputs | |
# run: echo "REGION_DEFS=activitysim/examples/${{ matrix.region }}/** " >> $GITHUB_ENV | |
# | |
# - name: Get a random number | |
# run: echo "RANDOM_SUFFIX=${RANDOM}${RANDOM}" >> $GITHUB_ENV | |
# | |
# - uses: actions/cache@v3 | |
# # store the regional model's cache directory in github actions cache | |
# # this will (almost) never hit on primary key due to the random number | |
# # but will pull the most recent cache from restore-keys... and then | |
# # update the cache with additional compiled flows as needed. | |
# # Hoping this will result in fewer re-compiles on tests and faster | |
# # testing overall | |
# with: | |
# path: activitysim/examples/${{ matrix.region }}/test/output/cache | |
# key: ${{ matrix.region }}-${{ env.label }}-${{ hashFiles(env.REGION_DEFS) }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }}-${{ env.RANDOM_SUFFIX }} | |
# restore-keys: | | |
# ${{ matrix.region }}-${{ env.label }}-${{ hashFiles(env.REGION_DEFS) }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }} | |
# id: cache-example | |
- name: Test ${{ matrix.region }} | |
run: | | |
python -m pytest activitysim/examples/${{ matrix.region }}/test --durations=0 | |
external_regional_models: | |
needs: foundation | |
env: | |
mamba-env-prefix: /usr/share/miniconda3/envs/asim-test | |
python-version: "3.10" | |
label: linux-64 | |
strategy: | |
matrix: | |
region: | |
- prototype_mtc | |
- prototype_psrc_in_development | |
fail-fast: false | |
defaults: | |
run: | |
shell: bash -l {0} | |
name: ${{ matrix.region }} | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Setup Mambaforge | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
miniforge-variant: Mambaforge | |
miniforge-version: latest | |
activate-environment: asim-test | |
use-mamba: true | |
python-version: ${{ env.python-version }} | |
- name: Set cache date for year and month | |
run: echo "DATE=$(date +'%Y%m')" >> $GITHUB_ENV | |
- uses: actions/cache@v3 | |
with: | |
path: | | |
${{ env.mamba-env-prefix }} | |
~/.cache/ActivitySim | |
key: ${{ env.label }}-conda-${{ hashFiles('conda-environments/github-actions-tests.yml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }} | |
id: cache | |
- name: Update environment | |
run: | | |
mamba env update -n asim-test -f conda-environments/github-actions-tests.yml | |
mamba install --yes \ | |
"psutil=5.9.5" \ | |
"pydantic=2.6.1" \ | |
"pypyr=5.8.0" \ | |
"pytables=3.6.1" \ | |
"pytest-cov" \ | |
"pytest-regressions=2.5.0" \ | |
"scikit-learn=1.2.2" \ | |
"sharrow>=2.6.0" \ | |
"simwrapper=1.8.5" \ | |
"xarray=2023.2.0" \ | |
"zarr=2.14.2" \ | |
"zstandard=0.21.0" | |
if: steps.cache.outputs.cache-hit != 'true' | |
- name: Install activitysim | |
# installing without dependencies is faster, we trust that all needed dependencies | |
# are in the conda environment defined above. Also, this avoids pip getting | |
# confused and reinstalling tables (pytables). | |
run: | | |
python -m pip install -e . --no-deps | |
- name: Conda checkup | |
run: | | |
mamba info -a | |
mamba list | |
- name: Test ${{ matrix.region }} | |
run: | | |
python -m activitysim test ${{ matrix.region }} | |
random_seed_generation: | |
needs: foundation | |
env: | |
mamba-env-prefix: /usr/share/miniconda3/envs/asim-test | |
python-version: "3.10" | |
label: linux-64 | |
defaults: | |
run: | |
shell: bash -l {0} | |
name: random_seed_generation_test | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Setup Mambaforge | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
miniforge-variant: Mambaforge | |
miniforge-version: latest | |
activate-environment: asim-test | |
use-mamba: true | |
python-version: ${{ env.python-version }} | |
- name: Set cache date for year and month | |
run: echo "DATE=$(date +'%Y%m')" >> $GITHUB_ENV | |
- uses: actions/cache@v3 | |
with: | |
path: ${{ env.mamba-env-prefix }} | |
key: ${{ env.label }}-conda-${{ hashFiles('conda-environments/github-actions-tests.yml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }} | |
id: cache | |
- name: Update environment | |
run: | | |
mamba env update -n asim-test -f conda-environments/github-actions-tests.yml | |
mamba install --yes \ | |
"psutil=5.9.5" \ | |
"pydantic=2.6.1" \ | |
"pypyr=5.8.0" \ | |
"pytables=3.6.1" \ | |
"pytest-cov" \ | |
"pytest-regressions=2.5.0" \ | |
"scikit-learn=1.2.2" \ | |
"sharrow>=2.6.0" \ | |
"simwrapper=1.8.5" \ | |
"xarray=2023.2.0" \ | |
"zarr=2.14.2" \ | |
"zstandard=0.21.0" | |
if: steps.cache.outputs.cache-hit != 'true' | |
- name: Install activitysim | |
# installing without dependencies is faster, we trust that all needed dependencies | |
# are in the conda environment defined above. Also, this avoids pip getting | |
# confused and reinstalling tables (pytables). | |
run: | | |
python -m pip install -e . --no-deps | |
- name: Conda checkup | |
run: | | |
mamba info -a | |
mamba list | |
- name: Test Random Seed Generation | |
run: | | |
python -m pytest test/random_seed/test_random_seed.py --durations=0 | |
estimation_mode: | |
needs: foundation | |
env: | |
mamba-env-prefix: /usr/share/miniconda3/envs/asim-test | |
python-version: "3.10" | |
label: linux-64 | |
defaults: | |
run: | |
shell: bash -l {0} | |
name: estimation_mode_test | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Setup Mambaforge | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
miniforge-variant: Mambaforge | |
miniforge-version: latest | |
activate-environment: asim-test | |
use-mamba: true | |
python-version: ${{ env.python-version }} | |
- name: Set cache date for year and month | |
run: echo "DATE=$(date +'%Y%m')" >> $GITHUB_ENV | |
- uses: actions/cache@v3 | |
with: | |
path: ${{ env.mamba-env-prefix }} | |
key: ${{ env.label }}-conda-${{ hashFiles('conda-environments/github-actions-tests.yml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }} | |
id: cache | |
- name: Update environment | |
run: | | |
mamba env update -n asim-test -f conda-environments/github-actions-tests.yml | |
mamba install --yes \ | |
"psutil=5.9.5" \ | |
"pydantic=2.6.1" \ | |
"pypyr=5.8.0" \ | |
"pytables=3.6.1" \ | |
"pytest-cov" \ | |
"pytest-regressions=2.5.0" \ | |
"scikit-learn=1.2.2" \ | |
"sharrow>=2.6.0" \ | |
"simwrapper=1.8.5" \ | |
"xarray=2023.2.0" \ | |
"zarr=2.14.2" \ | |
"zstandard=0.21.0" | |
if: steps.cache.outputs.cache-hit != 'true' | |
- name: Install Larch | |
run: mamba install "larch>=5.7.1" | |
- name: Install activitysim | |
# installing without dependencies is faster, we trust that all needed dependencies | |
# are in the conda environment defined above. Also, this avoids pip getting | |
# confused and reinstalling tables (pytables). | |
run: | | |
python -m pip install -e . --no-deps | |
- name: Conda checkup | |
run: | | |
mamba info -a | |
mamba list | |
- name: Test Estimation Mode | |
run: | | |
python -m pytest activitysim/estimation/test/test_larch_estimation.py --durations=0 | |
develop-docbuild: | |
needs: foundation | |
if: github.ref_name == 'main' | |
name: develop-docbuild | |
runs-on: ubuntu-latest | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
fetch-depth: 0 # get all tags, lets setuptools_scm do its thing | |
- name: Set up Python 3.10 | |
uses: actions/setup-python@v2 | |
with: | |
python-version: "3.10" | |
- name: Install dependencies | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
miniforge-variant: Mambaforge | |
miniforge-version: latest | |
use-mamba: true | |
environment-file: conda-environments/docbuild.yml | |
python-version: "3.10" | |
activate-environment: docbuild | |
auto-activate-base: false | |
auto-update-conda: false | |
- name: Install activitysim | |
run: | | |
python -m pip install . | |
- name: Conda checkup | |
run: | | |
conda info -a | |
conda list | |
echo ${{ github.repository }} | |
echo ${{ github.ref_name }} | |
- name: localize version switcher | |
run: | | |
python .github/workflows/localize-base-urls.py docs/_static/switcher.json | |
git update-index --assume-unchanged docs/_static/switcher.json | |
cat docs/_static/switcher.json | |
- name: Build the docs | |
run: | | |
cd docs | |
make clean | |
make html | |
- name: Push to GitHub Pages | |
uses: peaceiris/actions-gh-pages@v3.8.0 | |
with: | |
github_token: ${{ secrets.GITHUB_TOKEN }} | |
# Token is created automatically by Github Actions, no other config needed | |
publish_dir: ./docs/_build/html | |
destination_dir: develop |