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Filter by interaction 2 giving a gene name #44

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AdrianBZG opened this issue Jun 25, 2018 · 5 comments
Closed

Filter by interaction 2 giving a gene name #44

AdrianBZG opened this issue Jun 25, 2018 · 5 comments

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@AdrianBZG
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AdrianBZG commented Jun 25, 2018

As suggested by Rachel (@rachellyne).

Example query:

<query model="genomic" view="Gene.symbol Gene.name Gene.primaryIdentifier Gene.secondaryIdentifier Gene.organism.name" sortOrder="Gene.symbol ASC" constraintLogic="A and B" > <constraint path="Gene.dataSets.name" op="=" value="BioGRID interaction data set" code="A" /> <constraint path="Gene.interactions.participant2" op="LOOKUP" value="pparg" extraValue="" code="B" /> </query>

@AdrianBZG
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AdrianBZG commented Jun 25, 2018

A user might approach this in the following way:

  1. Input textbox to write a gene name
  2. Click button to add fitler
  3. The table gets filtered and the filter added on top

Optional for the user:
4. Delete the filter

@AdrianBZG
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AdrianBZG commented Jul 2, 2018

Remove BioGRID and IntAct dataset from the filter, then add a new Interactions filter (use interaction2 gene)

@AdrianBZG
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Type: Physical or Genetic (Maybe another filter)

@AdrianBZG
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@yochannah @rachellyne The Interactions filter is now fully working, check it out in http://im-browser-prototype.herokuapp.com/ 😄

Some pics:

interactionsfilter1

interactionsfilter2

@AdrianBZG
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AdrianBZG commented Jul 3, 2018

Note: the participant 2 gene symbol is optional, meaning you can just use the Type and Dataset filter, or you can write a specific gene symbol, and at the same time the other 2 filters can be "All" (meaning no filtering at all). And all the possible combinations.

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