Set Renv not to activate in docker images #71
Workflow file for this run
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# This is a workflow to run the hello-python module | |
# Analysis modules are run based on three triggers: | |
# - Manual trigger | |
# - On pull requests where code in the module has changed | |
# - As a reusable workflow called from a separate workflow which periodically runs all modules | |
name: Run hello-python analysis module | |
env: | |
MODULE_PATH: analyses/hello-python | |
AWS_DEFAULT_REGION: us-east-1 | |
concurrency: | |
# only one run per branch at a time | |
group: hello-python-${{ github.ref }} | |
cancel-in-progress: true | |
on: | |
workflow_dispatch: | |
workflow_call: | |
pull_request: | |
branches: | |
- main | |
paths: | |
- analyses/hello-python/** | |
jobs: | |
run-module: | |
runs-on: ubuntu-latest | |
defaults: | |
run: | |
shell: bash -el {0} | |
steps: | |
- name: Checkout repo | |
uses: actions/checkout@v4 | |
- name: Download test data | |
run: ./download-data.py --test-data --format AnnData | |
- name: Set up conda | |
uses: conda-incubator/setup-miniconda@v3 | |
- name: Install and activate locked conda environment | |
run: | | |
conda install conda-lock | |
conda-lock install --name test ${MODULE_PATH}/conda-lock.yml | |
- name: Run analysis | |
run: | | |
cd $MODULE_PATH | |
bash run_hello-python.sh |