Set Renv not to activate in docker images #89

	# This is a workflow to run the hello-R module
	# Analysis modules are run based on three triggers:
	# - Manual trigger
	# - On pull requests where code in the module has changed
	# - As a reusable workflow called from a separate workflow which periodically runs all modules

	name: Run hello-R analysis module
	env:
	MODULE_PATH: analyses/hello-R
	AWS_DEFAULT_REGION: us-east-1

	concurrency:
	# only one run per branch at a time
	group: hello-R-${{ github.ref }}
	cancel-in-progress: true

	on:
	workflow_dispatch:
	workflow_call:
	pull_request:
	branches:
	- main
	paths:
	- analyses/hello-R/**
	jobs:
	run-module:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout repo
	uses: actions/checkout@v4

	- name: Download test data
	run: ./download-data.py --test-data --format SCE

	- name: Set up R
	uses: r-lib/actions/setup-r@v2
	with:
	r-version: 4.4.0
	use-public-rspm: true

	- name: Set up pandoc
	uses: r-lib/actions/setup-pandoc@v2

	- name: Set up renv
	uses: r-lib/actions/setup-renv@v2
	with:
	working-directory: ${{ env.MODULE_PATH }}

	- name: Run analysis
	run: \|
	cd $MODULE_PATH
	bash run_hello-R.sh

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