Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Test benchmark data for the doublet GHA #467

Open
sjspielman opened this issue May 28, 2024 · 0 comments
Open

Test benchmark data for the doublet GHA #467

sjspielman opened this issue May 28, 2024 · 0 comments
Assignees
Labels

Comments

@sjspielman
Copy link
Member

If you have a small dataset that you can download and run instead, that would be the preferred solution: you can set a ENV variable to select that option when running your wrapper script.

I had been wondering about this too. I think this is a separate PR, to not automatically download the full benchmark zip, but include an option to use smaller zip file with dummy data. I'd also have to change the dataset array here, too.

Originally posted by @sjspielman in #462 (comment)


This issue tracks (maybe!) adding tests benchmark data to improve the doublet detection workflow. That said, it's worth noting that, in the end, we may not care too too much about benchmarking results vs the doublet results on ScPCA data.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

No branches or pull requests

1 participant